Protein Info for Pf6N2E2_4193 in Pseudomonas fluorescens FW300-N2E2

Annotation: Signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 99 to 116 (18 residues), see Phobius details PF02518: HATPase_c" amino acids 395 to 502 (108 residues), 85.9 bits, see alignment E=1.4e-28

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a8)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZA2 at UniProt or InterPro

Protein Sequence (505 amino acids)

>Pf6N2E2_4193 Signal transduction histidine kinase (Pseudomonas fluorescens FW300-N2E2)
MSNQRRRESREPTQVQRLFRQLVREWLWISLLLLPLTALLSLSSQSTGNHPGAVLLSVCL
VAGVLGLLLLRPHLALWTTVGGMSLALLISAVLGARGWWWSPMASVLGILFGYLIWNWRR
LSVVLAYFGWELARLDAEPKVFPERRRASYTGSDRLQGQIMALEQAMSRTRDTRRFIADG
LEYLPVATMICDPQGKLLLGNRKARELFGHGLAGGDVLEHLGQLGYPGLEQGAHHRLSTL
PLVEFRDIRERSLRLERAALLPVDGDVPIGWLLSLTDLSAEREAEEQRSVMLRFLSHDLR
APHSAILALLDVQRHQVAGDNPLFDQIERQVRRALDLTEGFVQLAKAESEAYQFQPTLFA
MLVLDVLDQALPIAQAKRIQLIHEIKDEEAMVRADQPLLTRALFNLLENAIKYSVPDACI
SLQVHCTPGWLICNVVDQGKGISAEELPDLFSQYRRFSSAHGVDGIGLGLSMVKAVVDHH
EGKIECHSVVGKGTTFSLRFPLLED