Protein Info for Pf6N2E2_4143 in Pseudomonas fluorescens FW300-N2E2

Annotation: ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 137 to 155 (19 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details amino acids 319 to 339 (21 residues), see Phobius details amino acids 359 to 378 (20 residues), see Phobius details TIGR00056: ABC transport permease subunit" amino acids 129 to 378 (250 residues), 230.2 bits, see alignment E=1.6e-72 PF02405: MlaE" amino acids 166 to 375 (210 residues), 235.8 bits, see alignment E=2.1e-74

Best Hits

KEGG orthology group: K02066, putative ABC transport system permease protein (inferred from 99% identity to pba:PSEBR_a57)

Predicted SEED Role

"ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZ68 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Pf6N2E2_4143 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A (Pseudomonas fluorescens FW300-N2E2)
MTPGSHTGTARLDTSRSPARLWVGGDWTLAHYAQLKRLSESLRGQYDENTLIDLNGLGAL
DTAGASLLVELLGSERLGKTTEHPDCSLPAAERALLQTVYCSLTDFCVPVKEPQVSVLTQ
LLTRIGRAVEKVWQDTLQLLGFVGLILETLARNLFRPRRWRMTPMVVHIEQTGLDAAPIV
ALLTFLVGAVVAFLGATVLADFGASIFTVDLVAFSFLREFGVLLTAILMAGRTASAFTAQ
IGSMKANEEIDAIRTLGLDPVELLVIPRVLALLVALPMLTFLAMLSGIIGGGVVCALSLG
ISPAMFLTLLQSDIGVQHFLVGMVKAPIFAFLIAAVGCLEGFKVSGSAESVGAHTTSSVV
QSIFVVIVLDAVAALFFMEMNW