Protein Info for Pf6N2E2_4094 in Pseudomonas fluorescens FW300-N2E2

Annotation: Radical SAM domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF04055: Radical_SAM" amino acids 67 to 244 (178 residues), 72.2 bits, see alignment E=3.1e-24

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a99)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0N3 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Pf6N2E2_4094 Radical SAM domain protein (Pseudomonas fluorescens FW300-N2E2)
MSASLPPRGRGTAANPHNRFAPSRSVTEDDGWYQEVPPTQGTEVRIEMAKTIITRNTSSD
IPFDRSINPYRGCEHGCIYCYARPSHAYWDMSPGLDFETKLIAKSNAADVLEEQLSRRGY
QCAPIALGSNTDPYQPIEREQRITRRILEVLLRYRHPVTIVTKGSLILRDLDLLTELAQQ
RLVHVMISLTTLDDELKRILEPRAAAPKARLRAIKVMREAGIAVGVLCAPMIPMINDSEI
ESLLTEAHAAGAQNAAYVMLRLPLEVAPLFEDWLQAHYPQRAAHVLSLVRQSRGGELYDS
RFGARMRGEGPFADLLAQRFVKALKRLGLERRDGYNLDCDAFCPPGRQMSLI