Protein Info for Pf6N2E2_3957 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative membrane-bound ClpP-class protease associated with aq_911

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details PF01957: NfeD" amino acids 86 to 168 (83 residues), 47 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: K07403, membrane-bound serine protease (ClpP class) (inferred from 88% identity to pba:PSEBR_a230)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0L3 at UniProt or InterPro

Protein Sequence (174 amino acids)

>Pf6N2E2_3957 Putative membrane-bound ClpP-class protease associated with aq_911 (Pseudomonas fluorescens FW300-N2E2)
VNIHWLTVALLAISGPVLGADGLVLPGTDSLGFWLVAVGVALLVFEAALPNYGVAGLGGI
VLCVIGAVILTNADIPAPLMLGLGLASALLLIVLLVRALKTRPRQPVSGDAALLGSVTMV
TALQAGNHHHGWVQLEGERWQVASATPLRPGQAVRVITRKGLLLEVAPADSQGV