Protein Info for Pf6N2E2_3952 in Pseudomonas fluorescens FW300-N2E2

Annotation: putative RecF protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF13476: AAA_23" amino acids 6 to 43 (38 residues), 27.6 bits, see alignment 1.1e-09 PF13304: AAA_21" amino acids 23 to 347 (325 residues), 105.7 bits, see alignment E=1.2e-33

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a236)

Predicted SEED Role

"putative RecF protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0Q8 at UniProt or InterPro

Protein Sequence (386 amino acids)

>Pf6N2E2_3952 putative RecF protein (Pseudomonas fluorescens FW300-N2E2)
MLKTLAVANYRSINKLVIPLGRLNLITGPNGSGKSNLYRALRLLAETAQGGVVNALAREG
GLDSTFWAGPEEISRRMRNGEVPVQAIVRQGTKRLRLGFAGEDFSYSIALGLPEPSRSAF
SLDPEIKRECIWAGPVFRPASLLVDRNGPMIRAREGRSWDVLAQHTPTFDSLFDQVGSLR
TSPEVLQMREFIRRWRFYDHFRSDADAPVRQPQLGTRTPVLHHDGRDLAAALQTILEIGD
IEALHAAIGDAFPGAHLHIEKLQGGRFAIAFQQHGLLRPLSAAELSDGTLRYLLLVAALL
TPRPPSLMVLNEPETSLHPDLLPALARLIIRASVNCQVWVVSHATRLIAALEQDEDCNCI
VLEKELGQTGIVGQRMLDEPAWHWPD