Protein Info for Pf6N2E2_3949 in Pseudomonas fluorescens FW300-N2E2

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details amino acids 430 to 454 (25 residues), see Phobius details amino acids 464 to 491 (28 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 769 to 786 (18 residues), see Phobius details amino acids 855 to 874 (20 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 906 to 929 (24 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1006 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1004 (997 residues), 559 bits, see alignment E=9.9e-172

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfl:PFL_0238)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYS5 at UniProt or InterPro

Protein Sequence (1015 amino acids)

>Pf6N2E2_3949 RND efflux transporter (Pseudomonas fluorescens FW300-N2E2)
MKGPFNLSEWALRHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQ
EETLRQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLLDTTAAKEIPEIWYQVRKKIN
DIRGDFPDGLQGPGFNDEFGDVYGSVYAFTGDGLSMRQLRDYVEQVRAEIHDVPGLGKVE
MVGEQDEVLYLNFSTRKLAALGIDQREVVQSLQTQNAVTPAGVIDAGPERISVRTSGQFQ
SEKDLANVNLRLNDRFYRLADIADISRGYVDPATPMFRFNGTPAIGLAIAMKKGGNIQDF
GKALHARMSELTADLPVGVGVHTVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFVSLGVR
AGLVVACSIPLVLAMVFLFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEKG
DSKDQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWIV
AVLFAPVIGVHILSTNVKPHSAEPGRIGRAFNGGLLWAMRNRWWAIGITVLLFVLSVFCM
RFVQNQFFPSSDRPEILVDLNLPQNASMDETRRAVDRLEATLKGDPDIERWSTYIGEGAI
RFYLPLDQQLQNPYYAQLVIVSKGLESRTALTERLQKRLREDFVGIGSYVQALEMGPPVG
RPIQYRVSGKDIDQVRKHAIELATELDKNSHIGEIIYDWNEPGKVLRIDIAQDKARQLGL
SSDDVARLMNSIVSGSPVTQVNDDIYLIDVVGRAEDAERGSPETLQNLQIVTPGGTSIPL
LAFATVRYELEQPLVWRRDRKPTITIKAAVRDEIQPTDLVKQLQPAIDKFAAGLPVGYKV
ATGGTVEESSKAQGPIASVVPLMLFLMATFLMIQLHSVQKLFLVASVAPLGLIGVVLALV
PTGTPMGFVAILGILALIGIIIRNSVILVTQIDEYERDGYEPWDAVVEATEHRRRPILLT
AAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPKRD