Protein Info for Pf6N2E2_3935 in Pseudomonas fluorescens FW300-N2E2

Annotation: Outer membrane protein assembly factor YaeT precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details PF06977: SdiA-regulated" amino acids 62 to 307 (246 residues), 321 bits, see alignment E=6.5e-100

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a252)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161GL36 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Pf6N2E2_3935 Outer membrane protein assembly factor YaeT precursor (Pseudomonas fluorescens FW300-N2E2)
MAKTQALFAAKPARRSRFALPWYAWSLLAVAAAYGLAFAMHWDDRGLLWLSEHFQSPAER
QASIWLPDYRAVIDAKPLPGLEKDEASDVTYNPQTKTLFAVMGKNPFLVELTLQGDVLRK
MPLVGWSNPEGVTYMEDGLLAITDERSHTLTIVHVGADTRELNNADFPHYDLGPSKNKNK
GFEAIAWDPRNQQLVLGEERPPALFTWKSDGSQLLKGDKQIHVSNELDLRNLSALAIDPR
TGHMLVLSADSHLLLELDEKGEQVSFMTLLGGFNGLKDTIPRAEGVTVDEAGNLYMVSEP
NLFYRFEKQR