Protein Info for Pf6N2E2_3720 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG027190: Putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF19574: LolA_3" amino acids 17 to 173 (157 residues), 41.8 bits, see alignment E=7.6e-15 PF03548: LolA" amino acids 34 to 189 (156 residues), 36.2 bits, see alignment E=5.2e-13

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a449)

Predicted SEED Role

"FIG027190: Putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A2C2 at UniProt or InterPro

Protein Sequence (197 amino acids)

>Pf6N2E2_3720 FIG027190: Putative transmembrane protein (Pseudomonas fluorescens FW300-N2E2)
MKRLSVWLLLCCLAPLAQAFDLQQLSDQLARPEVIHGQFIQEKHLRALPQPLTSKGRFVL
AKNHGLLWLLQTPLQQDYRITAQGIARRDGNAWQMLPNKSAGAEQNRLFLAVLQGDSTGL
QRDFELSLSGEPQQWKLTLTPRSVLLKQVFNQINIDGGELVQRIELLETQGDSTVLRMQD
SNSAQPLSEAEQHDFAE