Protein Info for Pf6N2E2_3546 in Pseudomonas fluorescens FW300-N2E2

Annotation: ABC transporter (iron.B12.siderophore.hemin) , permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 26 to 27 (2 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 182 to 199 (18 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 245 to 273 (29 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details amino acids 315 to 333 (19 residues), see Phobius details PF01032: FecCD" amino acids 16 to 335 (320 residues), 307.7 bits, see alignment E=4.2e-96

Best Hits

Swiss-Prot: 39% identical to HMUU_YERPE: Hemin transport system permease protein HmuU (hmuU) from Yersinia pestis

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 98% identity to pba:PSEBR_a605)

Predicted SEED Role

"ABC transporter (iron.B12.siderophore.hemin) , permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1Y8 at UniProt or InterPro

Protein Sequence (336 amino acids)

>Pf6N2E2_3546 ABC transporter (iron.B12.siderophore.hemin) , permease component (Pseudomonas fluorescens FW300-N2E2)
MNGRHYGALLMFLGALLLVSCVVSLGFGPARVPVAVVWDILLNKAFGVGSAYWSPGQEHI
VWLIRVPRLLLGALVGAGLALIGAVLQAVTRNPLADPHLLGVTSGATLGAVIVVLHVGEI
VGLLTLPLAAFIGALLSMLLVLTIAARQGRLESDRLLLCGVAVSFVMMAAANLLLFLGDH
RASSAVMFWMLGGLGLARWELLAVPAASVVLGLVLLLGMARPLNALMAGEQTAVTLGLNA
AKVRLWIFLIASLMTGVLVSISGSIGFVGLMVPHIARRLVGAEHRRLLPACVLLGSLFLV
WVDVAARTLIAPEDLPIGVATAAIGGLFFIGLMRRR