Protein Info for Pf6N2E2_3461 in Pseudomonas fluorescens FW300-N2E2

Annotation: Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1150 PF04257: Exonuc_V_gamma" amino acids 11 to 366 (356 residues), 336.2 bits, see alignment E=1.9e-104 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1094 (1084 residues), 1218.9 bits, see alignment E=0 PF17946: RecC_C" amino acids 839 to 1077 (239 residues), 177.5 bits, see alignment E=3.1e-56

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 98% identity to pba:PSEBR_a682)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZJ5 at UniProt or InterPro

Protein Sequence (1150 amino acids)

>Pf6N2E2_3461 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) (Pseudomonas fluorescens FW300-N2E2)
MPDATSLSPAFMVVHGNRLDELRSLVISLMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDSGGCGIAAAIDVQLPGSFMWQLYRTVLGRDEIPAKSLLDKAPLTWRLMRLLPQL
IEQPHFEPLRRFLTHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAEGRHQTRNVRGE
IKSLAPANCWQAELWRALLLDVGEQGMAQSRAGVHQRYIERINSLEAAPKGLPARVIVFG
ISSLPAQVLEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPVVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSVFRDGRIDLFTDGTPTTLLSQL
QDDILELRPLNETREHWPIVDTERDGSIRFHVAHGAQREVEILHDQLLAYFSADPTLRPR
DIIVMVPDIDSYAPHIRAVFGQLDRSDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRERFGIDEADLPTLHRWIEGAGIRWGMSAEHRAGLGLPAELEQNS
WHFGLRRMLLGYAVGSSNAYEGIEPYDEIGGLDAALIGPLVALLDALEVAHQELTRPASP
QQWGSRLQDLMQLFFQASNEHDDYLLAQLEDLRETWLETCESVGLHDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGGDYRP
GDRSRREDDRYLLLEALLSAREKLYISWVGRSIRDNSERPASVLIGQLRDHLASGWRLAD
DSKPLLDALTQEHPLQPFSARYFHEGDELFSYASEWRMLHGVCDHTDKNQVLEPYVQEEP
LGLGQLQDFLRNPVRHFFSQRLKVFFEAIEAPLADDEPFVLDALQRYSLSDSLLEAALVR
LDQPDLALTAHAKRLQNSGLLPMAGFGECMQRELIEPLPDLLQRYQQLLALWPTPSVSAV
PVSLQLLGVNVEGWLSGLHQRSDGAVLAITAIPNSIGSTKTRKWHRLIRPWVNHLVACAN
GLSLTTALVASDDSLLLAPFEEPVAQRLLGDMLQAWQTGMRQPLPIAVKTAFAWLGQTDP
VKAEAAARKAYEGDGQTFEGERRESPALARQFPDFDALMADETFPDWCDALYRPLLEAPW
RSLVGEEARS