Protein Info for Pf6N2E2_3448 in Pseudomonas fluorescens FW300-N2E2

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 32 to 33 (2 residues), see Phobius details amino acids 39 to 64 (26 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 139 to 165 (27 residues), see Phobius details amino acids 176 to 200 (25 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details PF01925: TauE" amino acids 20 to 248 (229 residues), 86.5 bits, see alignment E=1.2e-28

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 95% identity to pba:PSEBR_a693)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1N6 at UniProt or InterPro

Protein Sequence (254 amino acids)

>Pf6N2E2_3448 membrane protein, putative (Pseudomonas fluorescens FW300-N2E2)
MNALIAFYQNLGLALSLLVIGTFLLAGTIKGVIGLGLPTIAMGLLGLAMAPTQAAALLII
PATLTNFWQLAFGGHLQALLRRLWPLLLTIFIGTGLGTLWLGMTGGAWVVRALGGALVLY
ALSGLLLPTLRVGAHVEPWIAPLCGLLTGLITSATGVFVIPAVPYLQALGLSKDELVQAL
GLSFTVSTLALAAGLVWRGALGGGELSASLLALVPALLGMWLGQWLRQRISAVLFKRVFF
IGLGALGGHLMING