Protein Info for Pf6N2E2_3435 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1531 PF20220: ABC_toxin_N" amino acids 8 to 137 (130 residues), 87.6 bits, see alignment E=8.6e-29 PF18413: Neuraminidase" amino acids 167 to 309 (143 residues), 85.5 bits, see alignment E=5.4e-28 PF18276: TcA_TcB_BD" amino acids 1239 to 1524 (286 residues), 262.2 bits, see alignment E=7.4e-82

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZB2 at UniProt or InterPro

Protein Sequence (1531 amino acids)

>Pf6N2E2_3435 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MTVAIKKQLDESLRDAQLALYLNQVAPNNPTTRNLKLKTAEALYEYWLLDVLVSQDVPTT
PVACAIASLQQYVHRILMNLEPGYDSASLGAEHLKTWRNELHQYPTWAAHQKLLYFPAIY
LDPLLRANKSDNFRQLENDLNQNQIQPDAVQSAVTAYLTRFEEVANLNILTGYIDGEDFA
NSTYYFIAKSRSENSYFWRSLNMAQRPINGTPPPSPATPPKLDQPDPYAWSDWEKANVPI
SDNAVEHSIRPVWFNNRLFVVWAECIHQDPSATRNASSPSQATTHHPLLRLSLCFKKPDG
SWSTPRVCLQGYCEDNALRSMELDAIKALVGTVAVQYRKGARDVLFLALCAREARTDSLN
STGNHFTFIKTTCIDKNLTPEPGSSATTEQAAEEHYRQYNADEKTLISATAQRIQTKTSA
EIVPIEVALPENMEVSMSDFDGHRQRIGIESVDGPSPSTLTLRMSAIIHLEHYGVRTSSN
RMEMRLRLTTVPYKTPRLQFVWVLPARSLPETPYVALSGGSFSSIHNAPSKFLEQNYRLS
FDHMTDAAKDNEHSPGITLTNDFQGKLISTQAARHLIAASRRVDHTSYAGKVQNLTLHAN
NSAPLNLGETFVSLDEPLLLQYVIFRRPDASHTQSLTYEDLTVVAESSPAPNLEKFLEFT
WRSTDLAKHGDTFLCGVAFVHPEEPEKKLYSALKAIKLKFTPARLQPPTITHVSTPGLGA
SQSIDFAGSAINESDAQNKPRQPIRLNTLFAPELIRRTENSLDDLFDWQTQHLPEPALPG
VVSNKMDFHGPYGRYFTELFLYVPWLIAYRLNTEQRYEEAERWLRYVFDPSRANEGCWRS
VPLVDSNMTAYHDQAPHDPHQIALSHPVHFRKALYFLYLDILINRGDAAYRALTPDSLSE
AKLWYVRALELLGPRAVVQTLDQWTSISLQALSESSNEDLRGFERFLSQSDTPHPLRIRG
NPSPSSLPAIDTPYLRVPFNPDLLKRWDITESRLYNLRHNLDIVGKPLHLPLFAPPLDPR
ALPGANALNIADSAASGLSLPHLPNYRFMVMHSQAQSAVESLSQFGATLLSLIERKEQAQ
LQELQQQQAWDLAKISVDLQRQALKIDRHNRQALLASRSIVEGRAHYYQHLLDKGVSEAE
RHACRLYLRSGSAERDASDSQAVAGSLMMTPNIFGFSNGGSRWEGALHAGAAIAQGTAIS
DRTTAAHLERTAQFHRRRQEWTQARDQAQLELAQVDAQLAHVAEQETATRLQLRLAESSL
GQAKTNYDFFRKRFTKAQLYQWLNSQFAALYRQAYDATVGLCLTAEACWQYELADLDTRF
IQPDTWNATYRGLGMGEQLKLSLLNMQAEYLRRNERDLEIRKTVSLRQLKSKTATSTINK
EWAQIHADLLQGQCEFELTQELFEEDYKDRQHYLRRIKTISVSLPAIVGPYENIRATLTQ
TASKVFMSPGGQSVESRHANQQIALSTGVDDNGLFTLNFNDERYLPFEYTGAVSTWCLNF
PNPEAQKDMLASLTDIIVQVNYTARAGGGSR