Protein Info for Pf6N2E2_3419 in Pseudomonas fluorescens FW300-N2E2

Annotation: Channel-forming transporter/cytolysins activator of TpsB family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 PF08479: POTRA_2" amino acids 56 to 131 (76 residues), 86.6 bits, see alignment E=1.2e-28 PF17287: POTRA_3" amino acids 133 to 187 (55 residues), 68.2 bits, see alignment 5e-23 PF03865: ShlB" amino acids 192 to 509 (318 residues), 322 bits, see alignment E=7.7e-100

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a720)

Predicted SEED Role

"Channel-forming transporter/cytolysins activator of TpsB family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXN9 at UniProt or InterPro

Protein Sequence (549 amino acids)

>Pf6N2E2_3419 Channel-forming transporter/cytolysins activator of TpsB family (Pseudomonas fluorescens FW300-N2E2)
MNIAVAAPTPGDTDLIRERQDRLLEEQRRRLEELKDLPGKEAKPTQPTAPVDTRCFPIKT
IELKGADALSDAERERLLKPYIGQCLGVPQLNELLKVITDHYLDKGLVTSRAYLPQQDLS
SGHLQVLVVEGRLEGLKGAENSQLSDRELAMAFPGKTGELLNLREMEQMVDQMNRLPSNR
AQMELTPGQNIGGSEVRVNNTPQKPWRAGLSRHNEGQKSTGEQQWGASLDWDSPLGLADQ
LALRGGHDAVSDHQKTSRNGMLYYNLPFGWWNLSYTYSQSEYRAVGQANGFNFKQSGDSQ
NHQVRLERVVHRDAVSKTSLNTGLSYLRTNNFIEDSKLAESSNRISEAQFGINHGRRIGN
AFVNLDLGLQQGIGALDAQGDHEPGPGLPDARYRKYTATLSYLQPFMLGGESFSFSSLMT
GQRSEDVLFSPQRMSLGGLSSIRGYKDQTLSGDSGGYWRNDLRWSRPVTVEWLRPVFAEY
GTSLGYDQGVIRGDRYNGDQHGRMSSNSLELFARGEHLNASVTFAHSLERPDALPEREAP
IYFRVDVSI