Protein Info for Pf6N2E2_3398 in Pseudomonas fluorescens FW300-N2E2

Annotation: Small GTP-binding protein domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 PF01926: MMR_HSR1" amino acids 55 to 178 (124 residues), 34 bits, see alignment E=4.2e-12 PF00350: Dynamin_N" amino acids 88 to 179 (92 residues), 35 bits, see alignment E=2.2e-12 PF18709: DLP_helical" amino acids 212 to 554 (343 residues), 312.4 bits, see alignment E=6.7e-97

Best Hits

KEGG orthology group: None (inferred from 60% identity to shn:Shewana3_2033)

Predicted SEED Role

"Small GTP-binding protein domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXP8 at UniProt or InterPro

Protein Sequence (577 amino acids)

>Pf6N2E2_3398 Small GTP-binding protein domain (Pseudomonas fluorescens FW300-N2E2)
MEQFNQFNVEKQAALKGLEQLRAVLDELGEMGADVGSELHKIDSAVQAVESDVLRIALLG
AFSDGKTSVIAAWLGKIMADMNINMDESSDRLAIYSPEGLPEKCEIVDTPGLFGDKEKSV
DGEQVMYEDLTKRYISEAHLILYVVDATNPLKESHNDIVKWVLRDLNKLSSTIFVINKMD
EVTDLTEQVLFDAQATIKKDNLKGKLQRAANLSPDELAKVNIVCLASNPNGRGLPFWFGK
PEHYESRSRINDLKAMTTQVLRHNVPAVLIAKTGMDVVRDLVGQHVVRAEEQLERLKAFA
EQNAEESARITQDIESGRREVKRLAGELFEELQNLEKGMLGKLRPLGLENIREFLEDELG
YTEDGVGFKLNLKIKGAIDRSFDQSSKVTSRISQDIGRQLNSSESFLNAMGDSALKSMGG
AAKGIANLSPDIIKGAVFAARDALSAVTGVAIKFKPWQATKIAGAISKWAGPAGAAITLT
SDLLNAYKAHELEQELKSAKESIAEMIKSAFKDIYDIIADDEKLLDFFAPQLKAFEKIVE
TVEERSRFISANQAKLQTVKAKLNALTLSPARLEANA