Protein Info for Pf6N2E2_3393 in Pseudomonas fluorescens FW300-N2E2

Annotation: Queuosine Biosynthesis QueC ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF06508: QueC" amino acids 11 to 170 (160 residues), 75.1 bits, see alignment E=2.9e-25

Best Hits

KEGG orthology group: K06920, queuosine biosynthesis protein QueC (inferred from 65% identity to mmt:Metme_4484)

Predicted SEED Role

"Queuosine Biosynthesis QueC ATPase" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1M1 at UniProt or InterPro

Protein Sequence (186 amino acids)

>Pf6N2E2_3393 Queuosine Biosynthesis QueC ATPase (Pseudomonas fluorescens FW300-N2E2)
VAWWLRPEIGITLNYGQLAAQAEICASKAICEQLQIEHHVISIDCRSVGSGDMAGGKADA
HAPASDWWPYRNQMLVTLAAMRAISLGVNKLYLGTVKSDGSHRDGTPEFIAAINQLMVMQ
EGEMTVEAPAIDLSTTELVKTAGVPSSILAWAHSCHKSSVPCGNCRGCNKYFEVWHEIEH
GMDQAR