Protein Info for Pf6N2E2_3322 in Pseudomonas fluorescens FW300-N2E2

Annotation: Peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1943 PF00501: AMP-binding" amino acids 40 to 265 (226 residues), 145.5 bits, see alignment E=3e-46 PF00550: PP-binding" amino acids 425 to 483 (59 residues), 33.2 bits, see alignment (E = 7.7e-12) amino acids 973 to 1029 (57 residues), 32.5 bits, see alignment (E = 1.2e-11) PF00668: Condensation" amino acids 521 to 926 (406 residues), 140.6 bits, see alignment E=9.5e-45 amino acids 1047 to 1478 (432 residues), 193.5 bits, see alignment E=9.1e-61 amino acids 1511 to 1920 (410 residues), 191 bits, see alignment E=5.2e-60 TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1346 to 1501 (156 residues), 101.9 bits, see alignment E=1.7e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZF9 at UniProt or InterPro

Protein Sequence (1943 amino acids)

>Pf6N2E2_3322 Peptide synthetase (Pseudomonas fluorescens FW300-N2E2)
MLEQCSCRWLIVEDDAQLLIDGIGLLTMPVRLEDLKDGAPFERCILADDSLAYVIFTSGS
TGMPKGAMVHHGGMLNHLLAKVEDLGMHKAPNVAQTAPQSFDISVWQFLAPLICGGRTAI
LTRSEFLDLDRLGARIELDEIDILQVVPSHLLAILDTICVDAQNARFDRLSCLVATGEVL
PVSLARRWLTTKPHVPLVNAYGPTECSDDVTHQVITRMPAADQAIPIGRAVRGVRLVVRD
ADLVALPVGEVGELYVEGVAVGLGYIGRPDLTAKAFVNVDGRRAYKTGDLVSCDGEGVFH
YHGRADDQVKVRGHRIELSEVEFGILRLAYIKQAAAVLNTSRTHAFLTAFIVEQEGTATD
LDRLRLDLHDVLPEHMIPSEFRVQSSLPQTSNGKIDKKKLTAIANETTAPDTVQSVATTA
TVGAEALLETWRELLRNPALRPADDFFKQGADSILALQFIARAKAHGYAFTLGDIFRHPT
TLGLLKIARTQNAVAGTAARMGVTQLDPQQAKGDSTSFKQISPAQKGIYVQSLRTRHRTT
YVLQYSFRMLLPDGGAVLEDGWRKAHQHHELLRSAFVLAPTGQPVRVVVEDAPLRWSRTS
LLHLDDEHQRKHLEDFIVQEKQTGFELDQPALYRVHLFHLGGHDYQFILSAHHLVLDGAS
IFALMSEVFSGAPVAQDAFSTYIAGQEKFHLQREDQQLWSDLLEPFHVPVCVADKLAEPS
LKPVEHRIFNRRLPATLEQGITGLSGRAGVTIAAVAATAWGMALNAINGGQHQLFGMIVS
GRADTGVGLDDIGMYANTLPIPLALAATQSPEVSLQAVSRRIAELLRFESISMNEALAST
RSRFANGAFDTVLNVETLADWAVLEAPGVTVELTQVTDLTEFAFAVEVLSGVDAITVDFI
RDPEYVSEERAEALCEHFLSALTYICEAHRPLQEWRGWQGVPMVGDETSAPKDQHPTSSQ
HTSFDTMVLAAARAIIGDDTIALQQNFFSSGGDSIGALQLIARLRSDGMTIDLDSIFASR
SLFEIAQAVRPLHCTARREIHPPTGATALVPVQRWFAEQQLVNPDHWCLGTAVEIHRPVA
ADTLVAITHKILERYPILSAQFKIGDGYDQTIPANPVDAKSSCRTAQLAASIDQSLEHIR
AVLDESLSGLDLEQGDLFRVVLFRTPDPDTNLLVLVAHHLVTDAVSLRILVEDYLRLYAG
STVPAQVTPFRAWAQQLASHGQAFKNDVLSQTAYWSRVIEAVPAAIPFDLNRRPSGRTAM
LSRGLSCAATSALIREVPAAYNTHINDILISALVRAFSGWRARPDIAINLEGHGRESVLE
GVDVSRTVGWFTSVFPVCLNDPQEGLGSLIQATKRTLADIPQRGVGYGLLRYLFNESRVI
PAAEPMVQFNYLGQWDNVSFDDPDVSMPSAQVLSLLDQVSVDPRNGRQHALEVEARIAQG
RFEIDWYYDDGILSPQEAEDLATRYVDALAQIIEHCTAGAVVRVPGDYPDVDLTDDELQS
LIAGVGAVPADIYPLSPTQEGILFQHLMSDDDTYTLQYVMDINGDVDISVLDAAWQVLAE
RHPILRTGFFWDAVAGPVQYVLQKATCSWQIIAGNGDPAQYERLMHDDRSRIFDLATPAL
TRFTLLSDGLQAHKLIWTYHHILLDGWCVAKVIKELFAIYDQMILGVQPEAVFGPVYRDY
IEWLASQQARENRPFWRHYLADARPSLFTSPVAYQPSSRAAHNVYRFTLGRDLSGCIERF
CAGLGVTVAVLFQRIWAQILADNTQSFTPIFGWAISGRPVDLEGSQDIIGLMASIVPCKV
DAQVPFSAEALRQLQRSSAALQDEGHVSMSHFRSAAGLGLEALFNTVLVVENFELQDNLP
VGDRYRLSNLQWIEKSEFPLVLGLVPADDFLIELNFNPEKFCVAQMVDLQQRIVFHSRQI
SSLGNGYLEHDANLQCESVSQAG