Protein Info for Pf6N2E2_3282 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG005080: Possible exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 1215 to 1234 (20 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 10 to 1266 (1257 residues), 1169.7 bits, see alignment E=0 PF13116: DUF3971" amino acids 515 to 791 (277 residues), 166.2 bits, see alignment E=1.2e-52 PF13502: AsmA_2" amino acids 1016 to 1260 (245 residues), 179.2 bits, see alignment E=1.1e-56

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a832)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A082 at UniProt or InterPro

Protein Sequence (1267 amino acids)

>Pf6N2E2_3282 FIG005080: Possible exported protein (Pseudomonas fluorescens FW300-N2E2)
MERLTRILAALTRWGLGLCALLLVLLALYVSLGRELVPLVAEYRAEVETRAGAALGMPVH
IGRLDGSWSALAPILAARDVVVGEGPNALHLDQVRVVPDLWDSLLARQVRIAHLEVSGLK
ISLKEGTDGKWALEGLPVKDDQPLDPQQLLERMQVVSRFSLLDSQVTLQPVEQPPLTLTY
VGLSLRTGAIRQRLDVRLTLPDGQPVAINLRTRIRASDWKNGQADAYLSLPQSDWSKWLP
KRLTQQWNFSRIKAGGEFWLSWGGGTVQSAAMRLNAPDILGAYAERKPVQIHNLALNGYF
QRGDQGFTATFDSLAMNLGETRWESRLQLQQSAATEKAEERWHLQADRLDLTPLTPLLNA
LAPLPEGLATTIDRLKVTGGLRNVLLDYRPQNTGDQKISFATNLDTVGFDAYRGAPAARN
VSGSLSGDLGGGELRMDSKDFSLHLDPIFAKPWQYLQANARLTWKLDKQGFTLIAPYLKV
LGEEGRIAGDFLIRLHFDHSQEDYMDLRVGLVDGDGRYTAKYLPAVLSPALDEWLRTAIV
KGAVDEGFFQYQGSLNHGAEDAARSISLFFKVHDAELAFQPGWPSVSKVSGDVFVEDSGV
RIFASQGQLLDTQVKDVSVNIPHVPSGQSVHLFLDGGFAGGLGDGLKILQTAPIGTAETF
AGWEGEGDLQGSVKLDIPLVKGEQPKILVDFATDKARLKLSEPVLELTQLKGDFRFDSNK
GLSGKGISARAFDRPVTAQIFAEGRAGALNTRVSASGQVEIKKLTSWLNVTQPLPVSGVV
PYQLQVILDGADSQLSVSSNLKGVAVDLPAPFGMAADVGRDTVFRMTLQGPERRYWLDYG
DLANFTYAAPSGKVADGRGELLLGAGDAVLPGAKGLRLRGTLPALDVSPWQDLVNKYAGQ
DPGGSAKQLLSSVDLTVGKLTAMGTTLDQASVQLDRRPDAWALRLDSQQAKGNVSLPDAK
AAPIGIKLDYVRLPATDPTVQADENSPDPLASVDPGKIPAMDIAIDQLFQGPDLIGAWSL
KVRPTAKGIALNELDMGLKGMVLNGSGGWEGAPGSTSSWYKGRIGGKNLGDVLKGWGYAP
SVTSQTFRLDVDGRWPGSPAWVATKRFSGSLDASLSKGQFVEVEGSAQALRVFGLLNFNS
IGRRLRLDFSDLFGKGLSYDRVKGLLVASDGVYVTREPITLTGPSSNLELNGTLDMVADR
VDAKLLVTLPVTNNLPIAALIVGAPAVGGALFLIDKLIGDRVARFASVRYDVKGPWKEPK
ITFDKPF