Protein Info for Pf6N2E2_3200 in Pseudomonas fluorescens FW300-N2E2
Annotation: Putative membrane protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
KEGG orthology group: None (inferred from 56% identity to vha:VIBHAR_p08265)Predicted SEED Role
"Putative membrane protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1329 amino acids)
>Pf6N2E2_3200 Putative membrane protein (Pseudomonas fluorescens FW300-N2E2) MISSYYLPRRLTSGDKIFTEEELLIASNFVVVLAEPGGGKTELLNSLARYLGTSAITANV FKHVGFDAVNCPLVIDAFDELAKVDRTGIYGLLADVKKATPTRVILSSRSSEWDTSTTNV FKEFLGRPPLVVRLCEFDETEQRTIFDHHVTNENFSIFQAEVSRFDLEALLPNPQFLKLF ANAYIESGRCFTDKKSIFSQAVEHLAKEANSNIARTNPTLSTPQKINLSSEVFAKLLLSG AEGISTSEATEDRMYPLLASLFTINTAADGILATRLFKPGDRADQHRPVHKIVAEYCAAD YLVKRIVDPTDPITLPKCLAVIAPNSTVRDELRGLLGWMASLGNKSIEESAIELDAYAVL ANGDPSLLERSSKRLLVRKLKEIESKDPYFRKGDFWRRFSVAGFFTQEVLDEIKPLLTTS SDGHLRNLLLELLSGSPANEYLIGELRQLTLAPNESEATRLLASRCLLDTRGYEHRNDLD ILIRQANHTSLNVAAKIIESIDPERIDPYYLSNFLRTCATLYPDHQKHHERVIGARYFIK HLVERLNLRLTKWLLDNLSQGLSCKCHKEPYECDCRNGISKIIGLMLDRYFELATPPFDS ENIWRWVENLNFHEQEVSSQSKAVQILQENSQLRQGIISYVFKNLTDRDQICNTKIHKFD WHSHSGLAFHTADYKFIVDLAFENDNPDLWACFIARHQLYRKEEERGPDDFRRHMRLQAS KKPPFLREWVKLNRAIEQSEREHRIPKFRRTRRMRRLRQYQEDVRVKNFDYFKNNRELVE SGRHWGSLVRFAELMLIDPEKIPCEIGDDTLVRNALRNCLDFINCYVPDLPKLAELQCSS QHQQSERVLYAACIEILREKGNLESVDIRLLKALRTNIYVAYNAISKEDRDTLKTEVDRL TFSNIKSAEIFLREYLEPQLAHPNCDSTEVWLLRRDEAFSHLRAKLSIEWLEKYNRLELG TLDTLFEIAAQHSTHENLRRVILKQCANSRYGGPTPDENKHIEQRRQFWFFRAWYFLSDP PEECWDFLKKDRETVFLFYERSGRISHGAHSYWPRLTPKKVEAILEAFIDEWPKVNLPNH WGTGSPKGENAYRFLTEIIWLINSDAANDAIPVLDRLIASPRFTEIHNDLQSIYSNQVRK LALRDFEPPTPLEIVARLDHDTVVTVEGLRELLIQELHFFQKAIDGGEFNSADRFYEKSE RVDEITSTLIIAERLSLRLEPQAISVTPEHQLKDANRSDFTASKFISGRRKLLVTEVKGQ WHKDLYTAASAQLHERYSIHPDAEQQGIFIVIWFGKHEKVSGRKRHSIKTAQDLKKSIEA TLPPAITGG