Protein Info for Pf6N2E2_3169 in Pseudomonas fluorescens FW300-N2E2

Annotation: Membrane proteins related to metalloendopeptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF18421: Peptidase_M23_N" amino acids 28 to 96 (69 residues), 83.2 bits, see alignment E=1e-27 PF01551: Peptidase_M23" amino acids 170 to 264 (95 residues), 104.5 bits, see alignment E=2.7e-34

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a945)

Predicted SEED Role

"Membrane proteins related to metalloendopeptidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZDS4 at UniProt or InterPro

Protein Sequence (273 amino acids)

>Pf6N2E2_3169 Membrane proteins related to metalloendopeptidases (Pseudomonas fluorescens FW300-N2E2)
MPRYLALLLLLCLTLNAHADSYISRLLNKPVPGGVAVVDLGSAVKAPKASYQGKPVLVVK
EQDNWLAIVGIPLTVQPGTQQISSGGGTQPFVVGYKKYPEQHITLKNKRQVNPNPADLKR
IDAELAVQLKAYRSFSPNIPSNLLLDKPVNGPLSSKFGVRRFFNGEERNPHAGLDFAVPA
GTPIKTPAAGKVILTGNYFFNGNTVFVDHGQGFISMFCHMSKIDVKVGQQLARGTVVGKV
GATGRATGPHMHWNISLNDARVDPAIFIGAFQP