Protein Info for Pf6N2E2_2935 in Pseudomonas fluorescens FW300-N2E2

Annotation: NAD(FAD)-utilizing dehydrogenase, sll0175 homolog

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 transmembrane" amino acids 101 to 121 (21 residues), see Phobius details PF21688: FAD-depend_C" amino acids 285 to 481 (197 residues), 272.4 bits, see alignment E=9.8e-85

Best Hits

Swiss-Prot: 54% identical to Y202_CLOB8: Uncharacterized protein Cbei_0202 (Cbei_0202) from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)

KEGG orthology group: K07137, (no description) (inferred from 99% identity to pba:PSEBR_a1176)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenase, sll0175 homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYE9 at UniProt or InterPro

Protein Sequence (537 amino acids)

>Pf6N2E2_2935 NAD(FAD)-utilizing dehydrogenase, sll0175 homolog (Pseudomonas fluorescens FW300-N2E2)
MLRITELKLPIDHPEEDLRPAIVQRLGIASDDLLDFTLFKRSYDARKKSSELCFIYTIDL
TVRDEASLLRKFADDRNVNEAPDISYNVVGQAPADLSERPIVVGFGPCGIFAALLLAQMG
FKPIILERGPEVRQRTKDTWGLWRKSVLNPESNVQFGEGGAGTFSDGKLYSQIKDPKFLG
RKVLHEFVKAGAPEEILYVSKPHIGTFRLTGVVETMREQIRALGGEVRFQQRVTDVLIED
GQLVGVELASGEQIHSKHVILALGHSARDTFRMLHSRGVYMEAKPFSVGFRIEHPQSLID
SARLGKYAGHPKLGAADYKLVHHAKNGRSVYSFCMCPGGTVVAATSEPNRVVTNGMSQYS
RNERNANSGIVVGITPEVDYPGGPLAGIELQERLESHAFVLGGSNYEAPAQLVGDFIAGK
PSTALGSVEPSYKPGVSLGDLALALPDFAIEAIREALPAFEKQIRGYSLHDAVLTGIETR
TSSPLRITRNESLQSLNVKGLFPAGEGAGYAGGILSAGVDGIRIAEAVARDILGLEA