Protein Info for Pf6N2E2_2752 in Pseudomonas fluorescens FW300-N2E2

Annotation: Exported zinc metalloprotease YfgC precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 155 to 176 (22 residues), see Phobius details PF01435: Peptidase_M48" amino acids 62 to 251 (190 residues), 120.8 bits, see alignment E=1.3e-38 PF14559: TPR_19" amino acids 286 to 333 (48 residues), 30.6 bits, see alignment 6.9e-11 amino acids 346 to 408 (63 residues), 38.5 bits, see alignment E=2.4e-13 PF13428: TPR_14" amino acids 372 to 409 (38 residues), 26.4 bits, see alignment 1.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a1342)

Predicted SEED Role

"Exported zinc metalloprotease YfgC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYB3 at UniProt or InterPro

Protein Sequence (477 amino acids)

>Pf6N2E2_2752 Exported zinc metalloprotease YfgC precursor (Pseudomonas fluorescens FW300-N2E2)
MTFLRPTLLTLACLLASPGFADDLPSLGDASSAIVSPEQEHQLGRAWLALLRSQVSQLND
PQLKDYVESSVYKLVETSQVNDRRLEFILINSPQLNAFAAPGGIVGVNGGLFLNAQTEGE
YASVMAHELAHLSQRHFARGVEAQQRMQVPMMAALLAGIVIAAAGGGDAGIAAIAGTQAA
AIQEQRRFSRQNEQEADRIGIQNLEKAGYDPRSMPTMFERLMRQYRFDARPPEFLLTHPV
TESRIADTRNRAEQAKPGGIEDSVRYQLIRARVQLIYEETPGLGAKRFRAQLDENPKNDV
ARYGLAIAQIKGGQLNEARENLKPLLAKSPNEIIYNLAQVDLDITSNKLADAQSRVDRML
GQYPGNYPLNQVRVDLLLKQNRPADAEKALENLLKTRPDDPDVWYMVAETRGLSGNIIGL
HQARAEYFALVGDYRQAIQQLDFAKRRAGTNFPLSSRIDARQRELMEQERMVKDMMG