Protein Info for Pf6N2E2_2682 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 218 to 239 (22 residues), see Phobius details PF00126: HTH_1" amino acids 8 to 66 (59 residues), 64.6 bits, see alignment E=6.6e-22 PF03466: LysR_substrate" amino acids 92 to 291 (200 residues), 99 bits, see alignment E=2.5e-32

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfl:PFL_1544)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WT89 at UniProt or InterPro

Protein Sequence (307 amino acids)

>Pf6N2E2_2682 Transcriptional regulator, LysR family (Pseudomonas fluorescens FW300-N2E2)
MKAPRVTLDQWRTLQAVVDHGGFAQAAEVLHRSQSSVSYTVARMQDQLGVPLLRIDGRKA
VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPNARLVRALTAFMP
QSRGCRVRLREEVLSGVEEVLLEGVADLAISGFSIPGYLGAELSDVEFIAVAHPEHALHR
LNRELNFQDLESQLQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAASFVGSGLGFAWLP
RHMIERELKEGVLKRLPLEQGGSRNSTFYLFSNKEKPLGPATQILIELLRTFDTAPLDAP
FAAPEQA