Protein Info for Pf6N2E2_2671 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4361 transmembrane" amino acids 3805 to 3829 (25 residues), see Phobius details amino acids 4013 to 4030 (18 residues), see Phobius details PF05860: TPS" amino acids 60 to 307 (248 residues), 190.9 bits, see alignment 5.8e-60 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 82 to 180 (99 residues), 64 bits, see alignment (E = 9.7e-22) PF05594: Fil_haemagg" amino acids 233 to 308 (76 residues), 9.1 bits, see alignment (E = 0.00036) amino acids 313 to 388 (76 residues), 5.2 bits, see alignment (E = 0.006) amino acids 401 to 469 (69 residues), 17.1 bits, see alignment (E = 1.1e-06) amino acids 445 to 519 (75 residues), 13.8 bits, see alignment (E = 1.2e-05) amino acids 508 to 556 (49 residues), 13.5 bits, see alignment (E = 1.5e-05) amino acids 566 to 635 (70 residues), 29.9 bits, see alignment (E = 1.1e-10) amino acids 628 to 684 (57 residues), 16.6 bits, see alignment (E = 1.6e-06) amino acids 680 to 725 (46 residues), 14.7 bits, see alignment (E = 6e-06) amino acids 803 to 849 (47 residues), 6.7 bits, see alignment (E = 0.002) amino acids 840 to 888 (49 residues), 13.1 bits, see alignment (E = 2e-05) amino acids 895 to 962 (68 residues), 15.3 bits, see alignment (E = 4.1e-06) amino acids 957 to 1023 (67 residues), 18.1 bits, see alignment (E = 5.3e-07) amino acids 1021 to 1085 (65 residues), 15.4 bits, see alignment (E = 3.9e-06) amino acids 1099 to 1168 (70 residues), 20.8 bits, see alignment (E = 7.6e-08) amino acids 1125 to 1190 (66 residues), 7.3 bits, see alignment (E = 0.0013) amino acids 1210 to 1260 (51 residues), 18 bits, see alignment (E = 5.7e-07) amino acids 1257 to 1314 (58 residues), 14.4 bits, see alignment (E = 7.7e-06) amino acids 1400 to 1456 (57 residues), 4.7 bits, see alignment (E = 0.0081) amino acids 1453 to 1518 (66 residues), 29.7 bits, see alignment (E = 1.3e-10) amino acids 1515 to 1579 (65 residues), 19.9 bits, see alignment (E = 1.5e-07) amino acids 1565 to 1629 (65 residues), 10.6 bits, see alignment (E = 0.00012) amino acids 1625 to 1671 (47 residues), 16.9 bits, see alignment (E = 1.2e-06) amino acids 1813 to 1869 (57 residues), 18.2 bits, see alignment (E = 5.1e-07) amino acids 1875 to 1932 (58 residues), 20.3 bits, see alignment (E = 1.1e-07) amino acids 1919 to 1996 (78 residues), 4.9 bits, see alignment (E = 0.0069) amino acids 1970 to 2037 (68 residues), 14.1 bits, see alignment (E = 9.3e-06) amino acids 2040 to 2086 (47 residues), 7.6 bits, see alignment (E = 0.001) amino acids 2075 to 2128 (54 residues), 17.8 bits, see alignment (E = 6.5e-07) amino acids 2149 to 2192 (44 residues), 13.3 bits, see alignment (E = 1.7e-05) amino acids 2196 to 2254 (59 residues), 17.7 bits, see alignment (E = 6.9e-07) amino acids 2287 to 2325 (39 residues), 11.8 bits, see alignment (E = 5e-05) amino acids 2419 to 2458 (40 residues), 10.1 bits, see alignment (E = 0.00018) amino acids 2458 to 2503 (46 residues), 6.7 bits, see alignment (E = 0.0019) amino acids 2619 to 2678 (60 residues), 4.5 bits, see alignment (E = 0.0098) amino acids 2796 to 2831 (36 residues), 9.7 bits, see alignment (E = 0.00023) amino acids 2964 to 2991 (28 residues), 7.3 bits, see alignment (E = 0.0013) amino acids 3337 to 3383 (47 residues), 11.9 bits, see alignment (E = 4.8e-05) amino acids 3502 to 3548 (47 residues), 4.7 bits, see alignment (E = 0.0081) amino acids 3657 to 3691 (35 residues), 7.8 bits, see alignment (E = 0.00088) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 399 to 437 (39 residues), 19.1 bits, see alignment (E = 9.9e-08) amino acids 440 to 479 (40 residues), 16.8 bits, see alignment (E = 5.2e-07) amino acids 481 to 520 (40 residues), 23 bits, see alignment (E = 6e-09) amino acids 521 to 543 (23 residues), 7.5 bits, see alignment (E = 0.00045) amino acids 541 to 581 (41 residues), 29.1 bits, see alignment (E = 7.3e-11) amino acids 583 to 621 (39 residues), 21.8 bits, see alignment (E = 1.4e-08) amino acids 624 to 664 (41 residues), 25.4 bits, see alignment (E = 1.1e-09) amino acids 665 to 703 (39 residues), 13 bits, see alignment (E = 8.3e-06) amino acids 706 to 745 (40 residues), 17.5 bits, see alignment (E = 3.2e-07) amino acids 767 to 808 (42 residues), 16.8 bits, see alignment (E = 5.5e-07) amino acids 810 to 850 (41 residues), 29.7 bits, see alignment (E = 4.7e-11) amino acids 852 to 888 (37 residues), 20.6 bits, see alignment (E = 3.3e-08) amino acids 891 to 913 (23 residues), 6.8 bits, see alignment (E = 0.00074) amino acids 911 to 950 (40 residues), 20.4 bits, see alignment (E = 3.9e-08) amino acids 975 to 1014 (40 residues), 26.6 bits, see alignment (E = 4.6e-10) amino acids 1015 to 1041 (27 residues), 14.1 bits, see alignment (E = 3.9e-06) amino acids 1040 to 1074 (35 residues), 16.7 bits, see alignment (E = 5.7e-07) amino acids 1076 to 1114 (39 residues), 18.3 bits, see alignment (E = 1.8e-07) amino acids 1117 to 1155 (39 residues), 22.7 bits, see alignment (E = 7.7e-09) amino acids 1158 to 1198 (41 residues), 24.3 bits, see alignment (E = 2.3e-09) amino acids 1199 to 1239 (41 residues), 24.5 bits, see alignment (E = 2e-09) amino acids 1240 to 1280 (41 residues), 17.3 bits, see alignment (E = 3.8e-07) amino acids 1282 to 1321 (40 residues), 7.8 bits, see alignment (E = 0.00036) amino acids 1323 to 1354 (32 residues), 7.6 bits, see alignment (E = 0.00041) amino acids 1343 to 1385 (43 residues), 10.8 bits, see alignment (E = 4e-05) amino acids 1386 to 1425 (40 residues), 26.3 bits, see alignment (E = 5.6e-10) amino acids 1406 to 1444 (39 residues), 17.6 bits, see alignment (E = 2.9e-07) amino acids 1429 to 1465 (37 residues), 15.3 bits, see alignment (E = 1.6e-06) amino acids 1467 to 1486 (20 residues), 12.8 bits, see alignment (E = 9.5e-06) amino acids 1488 to 1526 (39 residues), 30.3 bits, see alignment (E = 3.1e-11) amino acids 1528 to 1566 (39 residues), 21.4 bits, see alignment (E = 1.9e-08) amino acids 1569 to 1609 (41 residues), 18.3 bits, see alignment (E = 1.8e-07) amino acids 1610 to 1650 (41 residues), 18.9 bits, see alignment (E = 1.2e-07) amino acids 1651 to 1691 (41 residues), 25.4 bits, see alignment (E = 1e-09) amino acids 1735 to 1766 (32 residues), 12.3 bits, see alignment (E = 1.4e-05) amino acids 1798 to 1836 (39 residues), 25.8 bits, see alignment (E = 7.7e-10) amino acids 1843 to 1878 (36 residues), 16.6 bits, see alignment (E = 6e-07) amino acids 1880 to 1919 (40 residues), 16.7 bits, see alignment (E = 5.6e-07) amino acids 1942 to 1980 (39 residues), 8.3 bits, see alignment (E = 0.00026) amino acids 1962 to 2004 (43 residues), 10.2 bits, see alignment (E = 6.1e-05) amino acids 1984 to 2024 (41 residues), 15.9 bits, see alignment (E = 1e-06) amino acids 2005 to 2036 (32 residues), 19.3 bits, see alignment (E = 8.6e-08) amino acids 2025 to 2063 (39 residues), 28.8 bits, see alignment (E = 8.9e-11) amino acids 2089 to 2129 (41 residues), 24.5 bits, see alignment (E = 2e-09) amino acids 2115 to 2149 (35 residues), 11.7 bits, see alignment (E = 2.1e-05) amino acids 2152 to 2191 (40 residues), 19.1 bits, see alignment (E = 1e-07) amino acids 2194 to 2232 (39 residues), 23.7 bits, see alignment (E = 3.6e-09) amino acids 2278 to 2319 (42 residues), 21.8 bits, see alignment (E = 1.5e-08) amino acids 2306 to 2340 (35 residues), 9.7 bits, see alignment (E = 9e-05) amino acids 2344 to 2367 (24 residues), 7.2 bits, see alignment (E = 0.00053) amino acids 2414 to 2449 (36 residues), 15.3 bits, see alignment (E = 1.6e-06) amino acids 2502 to 2536 (35 residues), 11.5 bits, see alignment (E = 2.5e-05) amino acids 2659 to 2698 (40 residues), 20.3 bits, see alignment (E = 4.2e-08) PF13332: Fil_haemagg_2" amino acids 3500 to 3564 (65 residues), 26.1 bits, see alignment (E = 1.3e-09) amino acids 3564 to 3632 (69 residues), 25.8 bits, see alignment (E = 1.6e-09) amino acids 3639 to 3715 (77 residues), 31.6 bits, see alignment (E = 2.6e-11)

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (4361 amino acids)

>Pf6N2E2_2671 Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family (Pseudomonas fluorescens FW300-N2E2)
MDDRQYAFLARQPSAALHARDRFCGMPKRGLAFLLANVMFWQPLWAQADGIVVSAPGTGL
SQAGNGVPIVNIAKPNGSGLSHNQFKDYNVGSNGVILNNATNRTQSTQLGGIILGNPNLN
GTAATTILNEVNGGNPSQLRGYTEVAGQSAHVIVANPYGISCNGCGFINAPKATLTTGKP
IIENGQVSRYQVDQGSVAIEGAGLNANNVDSFEIITRSARINAEIQAKNLTIVAGRNDVN
ANTLNATARADDGSAKPELAIDSSALGGMYAGTIKLVGTEAGVGVKLDGKLIASGGDIQL
DANGRLSLAETSASGAINVKAASLDARGPAYAGTRLNAQTQGNLSNQQSLAARDSITLNA
GGQLTNNGIIEAGVNADNTRNAAGDVSLEAQSLSNNGKSVVASRNLTVDVAQTLSNKGGT
LSAGQAATVNAATLDNQSKGRVLSSNTLNVTANTLLNTQGTVSSNGNLTANVSQLNNNGG
ELTGLSGVTLRVASLDNVAGLVAAGQGLDINASGQVNNRSGRLTSSKSVQLSAASVDNTA
GRLLSDGALTASISAQLLNQAGLLSSAGLLTLNAASLDNRQNGVVTTTQAASLDVGKLDN
RSGELSSQGVLTLTGTELDNSNSGKVIAYGDLRLTLERLTNQSLGLISTRGVLAVNAGQL
DNRQGSLYAQRGMNLDLRGQLLNAQGSLKSDATASVKAAGINNDAGQLTSVGALSIDSAA
TLSNLGGSLISGDTLLLKAGQVNNTSGRIASAKALNASVTGLEQQNGQLVSNTSLSLDLN
HGQLNNQGGLISTPGALLLNNLAAVNNRDGEISSDKSFSLNANSLDNSAGKVVSKQGLNL
TIAQALNNAQGVVSANGLAVRAASLDNSSGTLSSDADLSVDVDGTLTNLEGEVSSAGLTR
LNAMTLNNRNGQVLGDNALNISLGGALDNREGVLGSGKVVDIQAASLNNGNAGQVISDGS
LSARISGLLDNQGQGEVIAKGALDLQTGSLDNRGGRLTGVDLLTVRSDSLDNRGGNIRAD
RALQLTVAQLDNRSNGIITGKAGVGVEVTRLDNSGGLLSSVGPLNLKANEVQNALGRISS
QTDLTARIDTLQQQGGALVSQGNLSLTGSVLDNRNGGLVGTTKALDLQVEQIDNRAGELS
AGLDVKVGAQRLDNSDGGKLIAGSALELKVAQLINQTKGLVHAQGRLMLTGSTLDNSGGA
LSSLNALVITLDNALLNNKGLISSEGELSVDAGSLDNTAGSLGSAGALSIVSQGGLINQG
GSISTDAGLSLKSASLDNSQKGLVSGSAATQVSTGALNNSQGGRLTSGNTLALTATQVNN
ADGRIASSQALTASVTGLDQQQGELFSNTSVSLDMNQGQLNNQGGLINAAGLLLLSNLKD
VNNQGGEISSRLAFTLAARNLDNSGGKLLSNQALMLRTVQALNNAKGIVSAASVDSHSAS
LDNSDGLISSRDQLDVKVDTLLDNQRGSLIADGALVLNADRLDNRAASIAGKAGLDVTVT
ALDNRQGTLVSTTDLTLQASSLDNRQAGLIGATKALDINVDDLDNRGGELSGNTGVTLVS
KNLDNSDSGQIFAGQTLKLTVDKLLNRTKGLLSAKTQLSLDGGSLDNSGGYLVSQQNQRI
DLSGDLINTQGQLSSEGTLDVSAANLGNSGGSLSSAANLTVKSLGRLDNQGGELVTDGAL
LLSSTALDNRQQGNISGKGTVNISTGAFNNSQNGRLNSGSTLNLKAAQVTNQDGGRIGSQ
GALTASVSGLDQQGGQLFSNTSLSLDMNNGQLNNQNGLINAPGTLLLKNLLGVNNQGGEI
SSAQAFTLAAQNLNNDGGRLLSNQGLTLRIAQALNNVKGMIGAASVDVLAQSLNNNGGTL
TSRGKLDLTVGQEIDNQAQGLISAAQLLTLNSGNLNNQGGSVLAGGALVLNAMALDNSAN
GLINAQSRLTLGADSLDSSDGGEVSAKGDMNLTLAALTQNGGRLLGEQAVTLNLGGHDLN
NRNGLITAKGLLTVNGLRNLDNQGGEISSSQSFNLSGQTIDNSGGKLISSQNLSLHGDSL
VNQNGLISGWQDLQVSGSSLDNRNNGTLSSRNGDVGVTLSGALLNSATGALVGQKKLTVS
AASLDNQGGNLSSGADQTLTVTGGLLNNAQGGLIDSGATLVMKAMTLGNVGGTVNAQNAL
SFTGTSVDNSGGNLIGNAAVTLNLKGALDNHGAKLASAGPLTVKDATAINNQGGQLVSQG
EMTLGTGTLDNSYTGTVAAKNALTVTASGAVQNHTNGLIYSQTADVELNAASLANGQGEM
QGQTGVSLELRADLDNQGGKLIAQTGDVNVTAANIDNRGGTLASLKGALEARTVGVLRNG
FDVNNKGGVIQGQRLGLRALAGLNNNGGRIAAQTGDIVIDTVGLNNRSGGLYASGLIKVS
GTGASLDNTAGQIAGNAINLDLDGALINRGGILESDSTLVVSAASLDNQTGQLRALGVTG
KTDFQIGSLFDNRNGKLESANSHLTLSANSFLNGGGQLLHLGDGTFDISLANVTGAGGDI
VTRGGLTLKADTWTNTSVIQAGRLTVDVNNFTQTETGQLLASTQLEGKGGNWVNNGLIAS
DGGLGLQLTGRYSGNGRVSSLGDMTVDAAAIDLSSVASITGGGTTTIGGRGGLGSLNNYG
RLTSAGALNITAGTINNYGTVAGADGLKLTASTLLNDQGGFLFSGADMKLRVGSFTNRKS
DVYALENIDVARNDLGGRSALMENDSGTMESGRDFSINADSIINKRGDFKTEAELYSSAL
GFRCSSCDSLPQYGSEQIPYYLVYKQQYRVLVSGDSTAVSASLSAGRNLAIDGASFVNSN
STTTAGGDISIIVDDFENSGTALGDYTSYQYINYNNIQNGDELQRVVDYNVYNDSGYNKD
IRFWNAAGDESFVLSRNFMTTNKPVDREYYQVVGPVVNMVDSYSGGGTKVVVFNSSKYSA
GIRTELPDFIKRLTPFKQEVFSSTSSDNFAPAIIQAGGNVSITATNKITNGVERPFATGI
TTSPRNTTTAASGSGKTTVVTLNSQLPPDLAQQQINPLTLPGFSLPTGQNGLFRLSGQGA
SDASSSQTPVVSQNWTIGGASVSASNRSTAAPTANVRDIQIADATQVSTAERQVQLLNRE
SGGVTAGASAIQVTAPTDSSTGTPQLPGHSLDGTIPRGVDIALDTSSTPPVGVSRPTDAS
VSGPAPVNGQTVARVTGLPSTTVASTPHKYLIETNPVLTDLKSFTSSDYLLTKLGYDADT
SAKRLGDGLFEQRLIQQAVVARTGQRFIDGQTSDEAMFEYLMNNAIASKDALNLSVGVTL
TAQQVAALTHDIVWLEEHEVNGEKVLVPVLYLAQANNRLAPNGALIAGQNVTLIAGKDLE
NAGTLRATNNLSASAGENLTNSGLIEAGNRLDLLAGNDIVNKSGGIIAGRDVSMNAIVGD
IINERTLTTASISNKGYTQRQDYADNASRIEAANDLTMGVGRDVNSVGSVMVSGRDTQIN
AGRDVNIVSAQQQTANTGGTRRSSITQLGSEVDAGRDVVVNAGRDFNAIASQISADRDVA
LAADENMTISSGANETHSYYKSKKVTAQKDHVKQIGSAISAGGDVRLDAGKDMALISSRI
NAGDEAYLVAGESLALLAAQDSDYSLYEKKKKGSWGKKQSRRDELTKVTHVGSEITTGGD
LTLVSGEDQHYQVAKLNSGNDLTLQSGGSITFESAKDLHQESHEKSKTSAAWFSMKGSGR
TDETVRQSELTAQGDLVISAVGKIHADVLQVNKQTVSESIDAMAKADPKLAWLKELDEQG
GVDWRQVQEIHTSFKYSNSGLGPAAQMIIAILMTVLLGPAGAGLGGWALAGASSLATTGT
VATINNNGDLGAGLKAVASKDGLTNAAIAAITAGVAENYLGDMTMTKQVNGKTVIDLSSI
EAVSHFAGQQLINNASAAAIAKAFGRDVTLAGILQSAVYNTLAAYSFDQVGNLGLKTGSP
EKIALHALVGGMIAEASGSDFAVGAMAAGVNETFANQLRRMSAQMSPENRDHLMLMSSQL
LGVVAAAAVAGDDANSLQTGAYVAGNATQYNNLNHPDMSDFVGDMNACGSSETCQKNTWE
GGKYEQISNEITDWSEKAVSGAFAKSLLTSIQGGLTALNDLNCTTATCTQYKDTLTERAL
NDLTNLAKVTDTWENATSVATLVIPTSGGARGAGVGEGGISPRVQAALDKFTEAKAVRTG
ASTGKNGSTPLGGPDAEAGMPYTHPVKDVPSEPIIPVPGRVQSRINIANGRTATTPLRDS
GKPVSAGFEHVLEGHFNREISNSRSVFTIAPEELKGILQSTSVVKSPVVGLPDGQFVRTV
DVGRTIGTTTLKDGGVPTSVLKVFTDRAGNLITTFPVKAGI