Protein Info for Pf6N2E2_2648 in Pseudomonas fluorescens FW300-N2E2

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2853 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 2439 to 2459 (21 residues), see Phobius details PF17803: Cadherin_4" amino acids 311 to 388 (78 residues), 30.9 bits, see alignment (E = 7.8e-11) amino acids 564 to 634 (71 residues), 36.8 bits, see alignment (E = 1.1e-12) amino acids 810 to 880 (71 residues), 36.8 bits, see alignment (E = 1.1e-12) amino acids 1056 to 1126 (71 residues), 34.2 bits, see alignment (E = 7.8e-12) amino acids 1303 to 1386 (84 residues), 25.6 bits, see alignment (E = 3.5e-09) amino acids 1544 to 1626 (83 residues), 26.6 bits, see alignment (E = 1.8e-09) amino acids 1784 to 1866 (83 residues), 25.9 bits, see alignment (E = 2.8e-09) PF17963: Big_9" amino acids 322 to 427 (106 residues), 30.5 bits, see alignment (E = 1.5e-10) amino acids 572 to 673 (102 residues), 34.7 bits, see alignment (E = 6.9e-12) amino acids 818 to 919 (102 residues), 37.5 bits, see alignment (E = 9.1e-13) amino acids 1064 to 1165 (102 residues), 37.5 bits, see alignment (E = 9.1e-13) amino acids 1309 to 1420 (112 residues), 35.5 bits, see alignment (E = 3.9e-12) amino acids 1553 to 1660 (108 residues), 34.5 bits, see alignment (E = 8.1e-12) amino acids 1793 to 1900 (108 residues), 34.2 bits, see alignment (E = 1e-11) TIGR01965: VCBS repeat" amino acids 372 to 441 (70 residues), 30.7 bits, see alignment (E = 4.3e-11) amino acids 605 to 687 (83 residues), 32.2 bits, see alignment (E = 1.5e-11) amino acids 851 to 933 (83 residues), 32 bits, see alignment (E = 1.7e-11) amino acids 1097 to 1182 (86 residues), 34.4 bits, see alignment (E = 3e-12) amino acids 1367 to 1421 (55 residues), 17.2 bits, see alignment (E = 7e-07) amino acids 1483 to 1568 (86 residues), 28.8 bits, see alignment (E = 1.6e-10) amino acids 1607 to 1667 (61 residues), 16 bits, see alignment (E = 1.6e-06) amino acids 1723 to 1808 (86 residues), 29.9 bits, see alignment (E = 7.7e-11) amino acids 1847 to 1907 (61 residues), 15.9 bits, see alignment (E = 1.7e-06) amino acids 1963 to 2036 (74 residues), 21.1 bits, see alignment (E = 4e-08) PF13519: VWA_2" amino acids 2054 to 2165 (112 residues), 40.4 bits, see alignment (E = 1e-13) PF00353: HemolysinCabind" amino acids 2585 to 2613 (29 residues), 21.9 bits, see alignment (E = 3.4e-08) amino acids 2615 to 2649 (35 residues), 37.3 bits, see alignment (E = 5.3e-13) amino acids 2680 to 2711 (32 residues), 19.7 bits, see alignment (E = 1.7e-07) amino acids 2704 to 2737 (34 residues), 25.9 bits, see alignment (E = 2e-09) amino acids 2713 to 2738 (26 residues), 17.9 bits, see alignment (E = 6.4e-07) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 2748 to 2849 (102 residues), 63.4 bits, see alignment (E = 5.3e-21)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXM2 at UniProt or InterPro

Protein Sequence (2853 amino acids)

>Pf6N2E2_2648 T1SS secreted agglutinin RTX (Pseudomonas fluorescens FW300-N2E2)
MAALIGIVSKIVGQVFAEAAGGLRRPLVEGDRLYAGEHLVTGAEGAVAVRMQNGQTLTLG
RESNLTLTPQLLANHAPHVDTPDAATPSNAQLTDVQKLQQAIAAGADPTQTGEATAAGPE
GGNPGGVGGGHSFVLLEEVGGEVDPQIGFPTAGFNGIPEFPQLRLAGDPDNTGDDATVPP
VTPDNPVTLDGVNVEGGELTTNEANLADGSASNPGALVQSGTFTVSAPDGLSSLSIGGIN
VITGGVPTGFPQTITSALGNTLTITGYDPATGVVSYSYTLTDNETHPAGGGANNITEQFP
VVAVDTDGDTATGTLDVNITDDVPQAIDDSHANTASETLVTLTGNVLPNDHQGADRIPTG
PDSGPIIGGTFTGTYGTLVLNPNGTYTYTLNPSDPQFVALHGGGSGTETFTYTLTDADGD
TSTANLVLQVHNNDDPVVLVGLDAEGGELSLQEKNLSDGSSPDASALTQSGTFTVTALDG
VQTLSVGGINVVTGGVAAGFPQSITTALGNTLTITGYNASTGVVSYSYTLLDNEAHPNAN
GANSISEQFAVVVTDDNGTTANGNLDVNIVDDLPKAVDDSNASTASETLVTLTGNVLPND
TQGADHVASGPITPGTFTGTYGTLVLNADGSYTYTLNTSDADFKGLHGGGNGSETFTYTL
TDADGDTSTANLVLQVHNNDDPVVLVGLDAEGGELSLQEKNLSDGSSPDASALTQNGTFT
VTALDGVQTLSVGGINVVIGGVAAGFPQSITTALGNTLTITGYNASTGVVSYSYTLLDNE
AHPNANGANSVSEQFAVVVTDDNGTTANGNLDVNIVDDLPKAVDDSNASTASETLVTLTG
NVLPNDTQGADHVASGPITPGTFTGTYGTLVLNADGSYTYTLNTSDADFKGLHGGGNGSE
TFTYTLTDADGDTSTANLVLQVHNNDDPVVLVGLDAEGGELSLLEKNLSDGSSPDASALT
QNGTFTVTALDGVQTLSVGGINVVIGGVAAGFPQSITTALGNTLTITGYNASTGVVSYSY
TLLDNEAHPNANGANSVSEQFAVVATDDNGTTANGNLDVNIVDDLPKAVDDSNASTASET
LVTLTGNVLPNDTQGADHVASGPITPGTFTGTYGTLVLNADGSYTYTLNTSDADFKGLHG
GGNGSETFTYTLTDADGDTSTANLVLQVHNNDDPVVITGLDTEGGELSLLEKNLSDGSSP
DALALTQSGTFTVTALDGVQTLSVGGINVVIGGVAAGFPQSITTALGNTLTITGYNASTG
VVSYSYTLLDNETHPNANGANSVSEQFAVVVTDDNGTTANDNLDVNIVDDLPTAHADSAS
VDEGGTVSGNVLNNDEGGADGPAASGAVIGVRAGNDTSTPAIGGLNTQINGTYGYLTLDA
NGNAVYHSNPNTVSAPGATDVFTYTVRDADGDESTTTITIDVHDICLVATPDHEISVYEK
ALDLNQDGQDLAPGTVTGSAPNATSETASGSLVGSISGAVGTVTFALVGNATGAYGQLSL
QPDGSYTYTLTSPATTTPHANDGPNVLSESFTYQATDSLGNTVTSTIVIDIVDDVPKAHA
DFASVVEGGTVNGNVLDNDVLGADGGAIIGVRAGNDTSNPAIGGLNSQINGTYGYLTLDA
NGNAVYHSNPDAVGAPGATDVFTYTVRDADGDESTTTITVDVHNSCLVAETDHDVTVYEK
ALDLTQDGQDLAPGTVTGSAPNATSETASGSLVGSISGAVGTVTFALVGNAAGAYGQLSL
QSDGSYTYTLTSPATTTPHANDGPNVLSESFTYQATDSLGNTVTSTIVIDIVDDVPKAHA
DFASVVEGGTVNGNVLDNDVLGADGGAIIGVRAGNDTTNPAIGGLNSQINGTYGYLTLDA
NGNAVYHSNPDAVGAPGATDVFTYTVRDADGDESTTTITVDVHNSCLVAETDHDVTVYEK
ALDLTQDGLDLAPGTVTGSDPSATGETASGTLVGSVSGATGAVTFTLVGNATGAYGQLLL
HPDGSYTYTLTSPATTTPHANDGPNVLSESFTYQATDSLGNSTTGSLVVSIVDDIPKAVA
SERSVTAVEVDSNLLIVLDVSGSMKDDSGVPGLSRMDLAKQAISALLDKYDDMGDVKVQL
VTFSGSATDQSAVWVDVATAKTLIAALSAHGDTNYDAAVAMAKTAFATPGQLTGAQNIGY
FFSDGKPTLGEIGSADEVAWKAFLDANGIKNYAVGLGSGARNVNLDPLAYDGSTHTDTNA
VVVTDLNQLNSVLSGTVQGAPVTGNLLGEGGSFGADSGFIKSLVVDGTTYSYDPAANGGH
GALTASGGLNHGSFNTATNTLSIATDHDGTLVVNLDTGAFSYTSQTATSTLITEHIGYTV
SDHDGDLASSNLVINVVPNSPPIAADDNIITNVLSGNIVIPGELLLGNDSDANGDPLSAS
PTSFNTGWVAKGADFTGSTGTASFTGNNVQSINLSRSAFVANTASMTAMLVVSGALGMVS
NNNTNDEDRLNISLKQGETLTLDHNLSAGRIAMEYSLNGGPFIAINDGASFTAAADGNYQ
IHVTNIANPGGGNSNAAENYQLTLTVDYSGAQDKTPDYHGSYTASDNHGGSDSAAVGISY
QAGHTLTGTSGDDVLLAGNGDNILNAGDGNDVLSAGSGNNTLNGGAGNDLLYSGAGNDLL
DGGTGNDTVSYAHATSAVTVNLGLLAAQNTLGAGTDTLIGIENLVGSNFNDTLTGDGASN
RINGGLGHDVLNGGGGDDLLIGGLGNNTLTGGSGADTFQWQAGNSGHDVITDFAPGVDKL
DLSQLLQGENGSAASLDDYLHFSVSGSGASVITSIDVSAIAGATPNQTIDLAGVNLASHY
GVTPGADGMIAGADTATIINGMLNDHSLKVDTV