Protein Info for Pf6N2E2_2642 in Pseudomonas fluorescens FW300-N2E2

Annotation: putative patatin-like phospholipase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 PF01734: Patatin" amino acids 23 to 215 (193 residues), 123.1 bits, see alignment E=2.5e-39 PF07244: POTRA" amino acids 328 to 389 (62 residues), 21.6 bits, see alignment 4.4e-08 PF01103: Omp85" amino acids 482 to 723 (242 residues), 49.9 bits, see alignment E=5.2e-17

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 99% identity to pba:PSEBR_a1438)

Predicted SEED Role

"putative patatin-like phospholipase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXU1 at UniProt or InterPro

Protein Sequence (723 amino acids)

>Pf6N2E2_2642 putative patatin-like phospholipase (Pseudomonas fluorescens FW300-N2E2)
LLLPLLGHANVSAVEAPRPKIGLVLSGGAARGLAHIGVLKALEEQGIKIDAIAGTSMGAV
IGGLYASGYKIDELEKLALGIDWQQALSDAPPRKDVPFRRKQDDRDFLVKQKLSFRDDGS
LGLPLGVIQGQNLALLLESLLAHASDTRDFDKLPIPFRAVATDIATGEKVVFRKGHLPKV
IRASMSIPAVFAPVELDNRLLVDGGMSDNIPLDVAREMGVDVAIVVDIGTPLRNRKQLVT
VVDVLNQSTTLMTRRNSEEQLATLKKDDVLIQPALASFGSTDFGRAQDMIDAGYRATRIL
ETRLAPLRPSEAPDAELMAARTPSERTPVITAIRVENDSKVGDDVIRYYVRQKIGEPLDL
GRLQTDMGTLYGLDYFEQVQYRVVRKGPDHTLVISARGRRTGTDYLRLGLSLSDDMRGDS
AFNLGASYRVNGINRLGAEWLTRAQIGDKQELYSEFYQPLDVGSRYFIAPYGQFESRNVE
SILDNDPVAQYRVERYGFGLNVGRQISNNGEIRFGVGQAWGKADVRIGDHDQPSENFNEG
FYELKYSFDSFDNVYFPHEGEDIGLSWRQYEPGLGSDQRYRQWEFKLDKALSSGPDTFIL
GGRYGRTLDTAEVVTSSFVLGGARQLSGFREDGVSGQNISLMRAVYYRRLTPRAYLPLDF
PLYIGGSLERGRAWNNDNEFDSGYINAASIFLGFDTPLGPLNFSYGFNDDDEQAVYLNLG
QTF