Protein Info for Pf6N2E2_2570 in Pseudomonas fluorescens FW300-N2E2

Annotation: Signal transduction histidine kinase CheA (EC 2.7.3.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 752 transmembrane" amino acids 612 to 629 (18 residues), see Phobius details PF01627: Hpt" amino acids 8 to 100 (93 residues), 64.8 bits, see alignment E=1.7e-21 PF02895: H-kinase_dim" amino acids 366 to 425 (60 residues), 56.7 bits, see alignment 6.8e-19 PF02518: HATPase_c" amino acids 472 to 612 (141 residues), 65.9 bits, see alignment E=1.1e-21 PF01584: CheW" amino acids 619 to 746 (128 residues), 94.6 bits, see alignment E=1e-30

Best Hits

KEGG orthology group: K03407, two-component system, chemotaxis family, sensor kinase CheA [EC: 2.7.13.3] (inferred from 90% identity to pfo:Pfl01_1566)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3, 2.7.3.-

Use Curated BLAST to search for 2.7.13.3 or 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXG8 at UniProt or InterPro

Protein Sequence (752 amino acids)

>Pf6N2E2_2570 Signal transduction histidine kinase CheA (EC 2.7.3.-) (Pseudomonas fluorescens FW300-N2E2)
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQL
NELVECCHIAENVFDILRKGERRVDSELMDVVLEALDAVNSMFSEVRERSPITAATPELL
AALARLAEPQSADEAAPVAEPAVEEPVAEASGDITDNEFEQLLDSLNTVKAQAEAPVAPA
APAAPVADGVASDEITDAEFESLLDQLHGKGQFAPDAVVPPTAPAAPKAAGDSSDITDDE
FEALLDQLHGKGTFAVDALDSAIASVPTPAKPAAATAGSDLISDHEFESLLDELHGKGKF
SEVGTASAAPAAAAAAAAPAAKAAPKPAAKAPEPKAEPAKPAAAAPAPARAAAAAPAEKP
ASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSQDEAMSKAVSNLDVVTADLQT
AVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVR
NAVDHGIESPEEREASGKVRSGKVILAAEQEGDHILLSISDDGKGMDPNVLRSIAVKRGV
MDKDAADRLSDTECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIYSTKG
QGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIVRDK
ALPLFYLKRWLVSSAAHVEQGEGHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGT
PGMSGATITGDGRIALILDVPSMLKRYAARRI