Protein Info for Pf6N2E2_252 in Pseudomonas fluorescens FW300-N2E2

Annotation: Disease resistance protein / Tetratricopeptide repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 929 transmembrane" amino acids 738 to 755 (18 residues), see Phobius details PF00486: Trans_reg_C" amino acids 31 to 106 (76 residues), 66.5 bits, see alignment E=1.9e-22 PF13401: AAA_22" amino acids 154 to 243 (90 residues), 38.9 bits, see alignment E=1e-13

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a3604)

Predicted SEED Role

"Disease resistance protein / Tetratricopeptide repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YPH2 at UniProt or InterPro

Protein Sequence (929 amino acids)

>Pf6N2E2_252 Disease resistance protein / Tetratricopeptide repeat-containing protein (Pseudomonas fluorescens FW300-N2E2)
MSQYLSLPVEQTVHFGPYRVHPRQRLVLEGGQPLRLGRRAVEILLVLLEHAGEVVSKQQL
IARVWPKSVVEDTNLRVHVAALRKALGDGQAGQRYIVTVAQRGYSFVAPLSFEPLDQWAH
VPHPSLTRNLPLRRTRMIGRQALVENLVAQLPRKRFITLVGTGGIGKTTVALRVAERLIG
QYRDGTHLLDLASLNEAAMIAPNLCALLDLPLQDGDPLDAIARQLKERHLLLVIDNCEHL
IDAVALLAETLLRGAPHLHILATSREDLRAEGEHVQRLDALAFPPREMPIEGYPALEYPA
LQLFAERALASRDDFELSDREVPLVIDICRRLDGIPLAIELAAAQIGRFTLEELHQQLQD
SVALLHNDADATPRQQTLRATLDWSFALLTVCEQTCLRRLAVFMGSFNLASAAAVIVGQN
VAPDQVLVSVSQLVAKSLLNVEIGDEEVRYRLLDTTRRYALEKLAEAGELAASQERHAER
CLALMGQAESDWENTPTRLWITRYADYRDDIRAALDRGLGPQGSHAVAIRLTARTLPLWQ
ELSLLKEHGLYVNKALQLLRASPAPCPRLTLALELAHASFNYHTEGGTPATVRAFATARQ
LARQCQELAGELRAVSGQMTVDLSCGDYQQALAHSRDFDRLGLQGDPTLSLSTQRLRVLA
LHFTGDQGAARREAEQVIQRLAQSGHLSRFSHGFGVQYDQSVAALTVLARILWLQGFAVK
ARRTANLALQIALQINHGISICYTLALTGCVIAHYTGDHSIARERLDLLKQQAKKHSVML
FHDWACHYDRAFDGQPLATRPSNGLIQDIAVTLRSDFVRPAQIERARSGAAGWCSAEILR
ADAETLLARNEPSLEEAAEAQLLAALGIARRHQALAWELRSATSLARLWQRQGQAHAAQA
LLDPVYRRFTEGFETPDLLEAGALLQALT