Protein Info for Pf6N2E2_2505 in Pseudomonas fluorescens FW300-N2E2

Annotation: Lipopolysaccharide biosynthesis protein WzxC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 transmembrane" amino acids 17 to 41 (25 residues), see Phobius details amino acids 47 to 70 (24 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 214 to 231 (18 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details amino acids 422 to 442 (21 residues), see Phobius details amino acids 448 to 470 (23 residues), see Phobius details PF01943: Polysacc_synt" amino acids 15 to 281 (267 residues), 113.3 bits, see alignment E=1.5e-36 PF13440: Polysacc_synt_3" amino acids 37 to 329 (293 residues), 228.1 bits, see alignment E=1.4e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXT1 at UniProt or InterPro

Protein Sequence (486 amino acids)

>Pf6N2E2_2505 Lipopolysaccharide biosynthesis protein WzxC (Pseudomonas fluorescens FW300-N2E2)
LKTKAISTANEKSRSGFFWLLLGTAGQNAVQLISILILARILTPVEFGVVGIGAAIIAFL
RIFSEVGVGPALVQKEEISSVDIKTANSMSLLLGVILAMSLYFSAESFSFFFSMPELTEV
LRTLAWMLPVISYSVVGQSLLQRRFEFKKLSSVTFSSYLVAYGGVSVYMALHGYGMWSLV
AAFWIQSIIFLILILILCRDAAKIGFSYPSAKGMLDFGVGYSMARLCNYAAGQGDNLVVG
KLLGAESVGLYGRAYQIMSMPAILFGSVVDKVFFPLMAKMQNNNEALERLYLSSIYFSLL
IFVYLSGYIYIFSDQLIGALFGDGWGEVARLIEVMSIGLYFRIGYKFSDCLTMAVGKVYA
RAGIQFLYALSVVVLVVLGSGWGLIGASVGVVVAIVLNYLMMMMLVWRILKFNVGGVFLR
HLKVLGLFSISLLIFMFLNRFIDIKSPLLGFVVSSLIYAVSFGVVLVVFARCLKEELGVL
KLVAKR