Protein Info for Pf6N2E2_2482 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transglycosylase, Slt family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF01464: SLT" amino acids 308 to 417 (110 residues), 64.8 bits, see alignment E=2.6e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a1599)

Predicted SEED Role

"Transglycosylase, Slt family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165Z8Z9 at UniProt or InterPro

Protein Sequence (473 amino acids)

>Pf6N2E2_2482 Transglycosylase, Slt family (Pseudomonas fluorescens FW300-N2E2)
MTRPQVLLLLCCSLLLPMPAEARLPGPVQAVAPGTVRDLAQIRSSRVLKVLVNQSRNSSG
EVQGQPIGVEYHRLRAFEQYLNGHARDGQEITLKIIPMAKDQLLGALQRGEGDLVAPGEL
LELQAGHAVSASDPIRTDVPLLLVGIKGEKRYTRVEQLSGKTLALPNGSAAGDSVSQINQ
KLALLKLPPVKVEWVDPTLAVEDVLEMVQGGIFHLTIVEQPIAERWSKILPKLRFDRQVL
IGEPSDEYWFVRRDAAMLRASIDRFLATYKVPANEDAAFLRIYRRLYQVHYPLARADRQR
LEKLRPVLQKHADAQGMDWLNLAALAFKESALQPNARSGTGPTGLMQITPSAAQRVGVDN
IQNLDANVQAGAKYLALIRRKFFASPKLNERERMAFVLAAYNMGPERVQGMRAEARRRGL
NPNQWFFQVERIAMEQVGMGAVSYVNSVNKYYLAFDRERESLEPGDQKVAQRK