Protein Info for Pf6N2E2_2355 in Pseudomonas fluorescens FW300-N2E2

Annotation: MxiG protein; Pathogenicity 1 island effector protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 131 to 150 (20 residues), see Phobius details PF09480: PrgH" amino acids 1 to 373 (373 residues), 327.8 bits, see alignment E=5.2e-102 TIGR02554: type III secretion apparatus protein PrgH/EprH" amino acids 1 to 374 (374 residues), 323.1 bits, see alignment E=1.3e-100

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXH3 at UniProt or InterPro

Protein Sequence (379 amino acids)

>Pf6N2E2_2355 MxiG protein; Pathogenicity 1 island effector protein (Pseudomonas fluorescens FW300-N2E2)
LRILNGPLQGCEFPLGEGTTLFVVGAVDVLGDGVRSASVPAETIFVPLEEGGCNFEVLAD
QATADGVPLRLLGDSVEVRHCAFQARVQIGSLQIALRPEHQPWAPECLGQAPETPSNAAA
LERWRAPWMRWCAVGLALVVLVGVMGLWSMPGPAPETDIRALITGASAEVQVLPGRDHSV
YVFVASERDAGWSRQVLTRHNALNGKVLMRDQERGRLEQVLIDHDPQLAWHFLDLKDPST
PRLLLSTQRNLLTPDKQAQLLDVLLAAAPYARDVVVQMQDDTLLADLAQGGLQRLALAFN
RIEHADGVTFSVEGNLQDAELAATRQYVDRFYRQWGDRYVHFTVELKDDALKGLSFQTGP
QGYVKTSASSWHFSNKQSR