Protein Info for Pf6N2E2_2229 in Pseudomonas fluorescens FW300-N2E2

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 200 to 223 (24 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 321 to 344 (24 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 319 (311 residues), 132.5 bits, see alignment E=8.8e-43 amino acids 208 to 376 (169 residues), 36.8 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to pba:PSEBR_a1805)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZX90 at UniProt or InterPro

Protein Sequence (383 amino acids)

>Pf6N2E2_2229 Major facilitator family transporter (Pseudomonas fluorescens FW300-N2E2)
MLLPIFLLSAAGFTVLTTEFVIVGLLPSIARDLQVSIPQAGLLVTLFAFTVAAFGPFLTA
WFARFERRKLFISVLVMFGLANMLAAVAPNIWVMAVARLIPALGLPVFWALASETAVDIV
GPQLAGRAIARIGFGIVCATVFGIPVGTLISDAFGWRSAFAILAVIAFAKALLLFIYLPK
TNLHQHQVSFRSQFKILRSPLMQGHVLLSILVFSGMFTAYTYLADILERLAGFDGTLVGW
CLMGFGAVGLLGNSLGGRAVDRHPLIASMVFCLFLIGGMVALVPSIHSPLALAAAMGIWG
VTQAALFLVSHVRLMKAAPQAPAFAASLNIAGANLGIGLGAMVGGRVIDTLGLGSVGFAA
AGFIFVSILLALLLMTFKPRVTC