Protein Info for Pf6N2E2_2126 in Pseudomonas fluorescens FW300-N2E2

Annotation: 4Fe-4S ferredoxin, iron-sulfur binding

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 41 to 59 (19 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details TIGR02745: cytochrome c oxidase accessory protein CcoG" amino acids 38 to 466 (429 residues), 561.3 bits, see alignment E=7.6e-173 PF12801: Fer4_5" amino acids 94 to 120 (27 residues), 23.4 bits, see alignment (E = 1.9e-08) amino acids 196 to 235 (40 residues), 9.2 bits, see alignment 0.00052 PF13746: Fer4_18" amino acids 216 to 322 (107 residues), 146.1 bits, see alignment E=2e-46 PF13534: Fer4_17" amino acids 220 to 284 (65 residues), 22.8 bits, see alignment E=4.4e-08 PF13183: Fer4_8" amino acids 220 to 283 (64 residues), 27 bits, see alignment E=2.1e-09 PF11614: FixG_C" amino acids 351 to 467 (117 residues), 95.6 bits, see alignment E=9.4e-31

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1895)

Predicted SEED Role

"4Fe-4S ferredoxin, iron-sulfur binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYU8 at UniProt or InterPro

Protein Sequence (470 amino acids)

>Pf6N2E2_2126 4Fe-4S ferredoxin, iron-sulfur binding (Pseudomonas fluorescens FW300-N2E2)
MSDRIPVQLIQTFEPAPSKIKARTTDNLIHTRSFTGLFRTLRISGAGVLFLLFFGTVWLD
WGGRQAVLWDLSESKFHIFGATFWPQDFILLSALLIIAAFGLFAITVFAGRVWCGYTCPQ
SSWTWIFMWCEKITEGERNQRIKLQAAPWGLNKLLRRSAKHTLWLAISLLTGLTFVGYFT
PIRPLAEELLTLQMAGVSLFWVLFFTAATYLNAGWLREAVCMHMCPYARFQSVMFDKDTL
TISYDAARGEIRGPRKREANPANIGLGDCIDCQMCVQVCPTGIDIRDGLQMECIGCAACI
DACDSIMDKMGYARGLIKYTSEHQLQGGKTHLLRPRLIGYTTVLLVMTGALVVALMQRPM
VSLDVSKDRGLFRENSAGQIENIYSLKIINKTQQRQDYQLSLVDGDGFILQGKTQLSLAP
GEIVDVPVSVAMLSERPGKGSQAMTFKVVDSDEPDIYSIAKSRFVAPMNR