Protein Info for Pf6N2E2_2006 in Pseudomonas fluorescens FW300-N2E2

Annotation: Rhs family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1778 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details PF13418: Kelch_4" amino acids 106 to 143 (38 residues), 28.1 bits, see alignment (E = 3.2e-10) PF13205: Big_5" amino acids 266 to 365 (100 residues), 45.8 bits, see alignment 1.8e-15 PF20148: DUF6531" amino acids 704 to 764 (61 residues), 44.2 bits, see alignment (E = 3.9e-15) TIGR01643: YD repeat (two copies)" amino acids 858 to 898 (41 residues), 20.6 bits, see alignment (E = 4.8e-08) amino acids 899 to 936 (38 residues), 23.4 bits, see alignment (E = 6.2e-09) amino acids 1021 to 1056 (36 residues), 28.3 bits, see alignment (E = 1.8e-10) amino acids 1066 to 1105 (40 residues), 32.7 bits, see alignment (E = 7.2e-12) amino acids 1148 to 1187 (40 residues), 19.3 bits, see alignment (E = 1.2e-07) amino acids 1189 to 1229 (41 residues), 26.2 bits, see alignment (E = 8.2e-10) amino acids 1306 to 1345 (40 residues), 25 bits, see alignment (E = 2e-09) PF05593: RHS_repeat" amino acids 878 to 914 (37 residues), 32.2 bits, see alignment (E = 2.2e-11) amino acids 899 to 936 (38 residues), 36.1 bits, see alignment (E = 1.3e-12) amino acids 1021 to 1053 (33 residues), 32.8 bits, see alignment (E = 1.5e-11) amino acids 1066 to 1101 (36 residues), 31.3 bits, see alignment (E = 4.2e-11) amino acids 1107 to 1142 (36 residues), 29.8 bits, see alignment (E = 1.3e-10) amino acids 1149 to 1183 (35 residues), 23.9 bits, see alignment (E = 9.1e-09) amino acids 1189 to 1224 (36 residues), 28.1 bits, see alignment (E = 4.1e-10) amino acids 1306 to 1337 (32 residues), 25.4 bits, see alignment (E = 3.1e-09) amino acids 1367 to 1403 (37 residues), 31.6 bits, see alignment (E = 3.5e-11) TIGR03696: RHS repeat-associated core domain" amino acids 1577 to 1652 (76 residues), 80.8 bits, see alignment (E = 8.4e-27)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUN2 at UniProt or InterPro

Protein Sequence (1778 amino acids)

>Pf6N2E2_2006 Rhs family protein (Pseudomonas fluorescens FW300-N2E2)
MKGNYSGCGAFSKTKIWLRQMTHCSLLLIAWLALSMMNSQASAASAIGGAAGSVPTRHAG
EAATLLPDGRWLLSGGSEKGVTLATLTVVDPVTNTETLFPGNLNTPRQDHTATLLPDGTV
LIVGGVGAEGSPLSQAERINIEKQQTQLVTGAAFTPRSRHTATLLLDGHVLLVAGLSPQK
TAVTSAELWDPRTGTVNTLPVSLSTARYGHTAQTLPSGSILIQGGKDQSDKPVAGSELYD
PAGQKFSSLEENQSGLPATSTSLQGPPETQASLPAANANAVGLNSWISLHFSKPMTVTSL
NSNTVTVIGPTGQITGRVTPVENGQAVFFVPTQELLPNTHYSVFVSGATDASGTQLTLAG
YTFTTQALTANTAPTSTTPSSAVDDQTKPLAPLADSEMVNAGPEDWVPGPEHLTGDWRTK
RPPSPLQDLPPLQAPLGVTALAGQVLLMNGKAAVGVKLKMGEQSAVTDATGRFLLSGIGT
GNQTLRIDGSGANKPGRQYGFFDDLVVIFENGKTQSLQYTIWLPRTDTQHAVSLPSPTTK
EVTVTTPHIPGLALHIPKGTVIRDTNGAVVSSVSITPIPVDRTPFPLPTHGIPVYFTIQP
GSANLQAIDPSSFKAAQIIYPNYNSRPAGSAMDFWTYDPVYKGWYVYGEGLVSQNGKQVI
PGDGVGVYEFTGAMVSVPSLAPAKNPTAGGGNQLLGVASSDKAEPVDTSTGLFTYPHTDL
VVADTLPLILTRTYLSEDTRSRAFGIGTNHVYDIFMVGDTSPWTYQDLILSNGERIHFNR
TSSGTSYGDAVYQHNGSPSDRFQGATISWVGGTWPWLLKLKDGSKMWFPDAENNTRLQNA
AMTQAMDRFGNTVTLTRDSLNNLQRVTSPNGHWISFTYDSSDRITQASDNMGRTVSYTYD
SNGNLWKVTDANGGVETYTYDSSHQMLTITRPNGNVLLSNSYDANGRVSQQILGPGSSVA
GTYQFAYTLSGSQVTQTDVTDPRGNIERLAFNGAGYVTTNTYGLGQPEQQSYSLQRNATT
NLVTSVTDALGRVTGYAYDGLGNLTSVTRLQGTSQAVTQSYTYDSTFNQLTSYTDGLSHT
TNYGYDSLGRLTQITDPLGNTVKFTSDSQGRLTQITDPIGANTTLSYSLGDLASVTDPLG
RTTSYFTDNVGRVMAITDAVGRRTMTEYDPLDRKIKVTDPLGSVTNFAYDTNSNLLSVTD
AKNGVHAYTYDARDRRVSYTDPLNATQSYGLDGLDNVTQWTARNGVIASYTYDALNRRTQ
SAFGQTLIGSGPSLTAPDATVGYTFDGGNRLTQIVDTQGGTITRGYDDLDRLLSEATTQG
TVSYTYNAADRRTSMTVTGQPSVNYTYDVGNRLTNLSNGSQSAAFTYDADNRRATLTLPN
GVTVSYGYDNAGQLVSLSYAKGGANLGNLSYGYDNAGQRVQLGGSLARTTLPDAVSTTSY
NAANQLTAWSGASLLYDANGNMTSDGSNTYTWDSRQRLSTLTGTTSGSFSYDAANRRGQK
TIAGQTTSYVFDGLNLVQELTGTVTPTVQTNFLTGGLDEVFSRTEASGSTYTYLTDALGS
IQALSDSSGSSTTQYTYGPYGHTNTSGSASANSLQYTGRENDGSGLYYYRARYYSPSFGR
FISEDPIELAGGINIFIYALGNPASLTDPLGLDTYVTNRDLSVVGTSARSWSNPATHTFT
FTTNHDGSVESTYSWGNSANLEGWNLNQPEDISAAEQSLKNGEAKKVGPAFMDSYYRIAF
DKLNIPANNHSNGIILNNCKSETANLNNLAWKLFSGAK