Protein Info for Pf6N2E2_1995 in Pseudomonas fluorescens FW300-N2E2

Annotation: Type IV secretory pathway, VirB4 components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 949 TIGR03744: conjugative transfer ATPase, PFL_4706 family" amino acids 48 to 939 (892 residues), 1435 bits, see alignment E=0 PF11130: TraC_F_IV" amino acids 61 to 466 (406 residues), 313.3 bits, see alignment E=1.3e-97

Best Hits

KEGG orthology group: None (inferred from 80% identity to adk:Alide2_1801)

Predicted SEED Role

"Type IV secretory pathway, VirB4 components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZW61 at UniProt or InterPro

Protein Sequence (949 amino acids)

>Pf6N2E2_1995 Type IV secretory pathway, VirB4 components (Pseudomonas fluorescens FW300-N2E2)
MAWFFPQHKYHEPTSEPTEQDAWSRHIAKLAERGIAGPGGWHNKPVTEADDTTFYDVAPS
FVERLPWVEFLPQSKCMLLEDGVSVAAFFELMPLGTEGRETAWLLQARDTLENVLQDSFD
ELDSNPWVVQLYAQDETNWDAYLNTLGQYLRPRARGSAFSDFYLRFFAHHLKAIAKPGGL
FEDTTLTRLPWKGQNRRVRMVVYRRASVATSRKGHSAEQALSNVCDRLTAGLSSAGLKTQ
RLEAKDIYDWLLRWFNPNPTLLGDAASDRDSFYQLTAYPEETEPGEIELASGTDFSQRLF
FSQPHSDATHGTWSFNGMPHRVMLMDRMRSVPHTGHLTGETRKGDAINSYFDQMPEDTMM
CLTLVATPQDVLEAHLNHLSKKSVGDTLASEQTRQDVQQARSIIGSAHKLYRGSLAFFLR
GKDIAELDARGLQLANVMLNAGLQPVREDDEVAPLNSYLRWLPCVFDPAKDKRQWYSQLM
FAQHAANLAPVWGRSQGTGRPGITFFNRGGGTLSFDPLNRLDRQMNAHLFLFGPTGSGKS
ATLNNILNQITAIYRPRLFIVEAGNSFGLFAEFAKRLGLTVHHVKLSPGAGVSLAPFADA
RRLIETPEEIETLDAERLEETAAPQEGDEQRDVLGELEITARLMITGGEDKEEARLTRAD
RSLIRQSILDAAQRCADEHRSVLTKDVRDALRERGRDNGLPESRRTRLLEMAEAMDLFCQ
GLDDELFNRPGTPWPEADITIVDLATFAREGYNAQLSIAYLSLLNTVNNIAERDQFQGRP
IINVTDEGHIITKNPLLSPYVVKITKMWRKLGAWFWLATQNLDDLPKAAEPMLNMIEWWI
CLSMPPDEVEKIARFRELSPAQKSMMMSARKEAGKYCEGVVLSKSMEALFRAVPPSLYLA
MAMTEPEEKAARFKLMQEHGISELDAAIRMAENIDRARGIQPLQFHSDG