Protein Info for Pf6N2E2_1956 in Pseudomonas fluorescens FW300-N2E2

Annotation: Outer membrane protein romA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13483: Lactamase_B_3" amino acids 100 to 309 (210 residues), 54.8 bits, see alignment E=1.8e-18 PF00753: Lactamase_B" amino acids 101 to 163 (63 residues), 29.3 bits, see alignment E=1.2e-10 PF12706: Lactamase_B_2" amino acids 115 to 309 (195 residues), 143.6 bits, see alignment E=9.2e-46

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a2031)

Predicted SEED Role

"Outer membrane protein romA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X3E1 at UniProt or InterPro

Protein Sequence (378 amino acids)

>Pf6N2E2_1956 Outer membrane protein romA (Pseudomonas fluorescens FW300-N2E2)
MAVVGIALLGIVGAFAYLQQPVFGDLPSGERLTRIEHSPNHADGVFRNQIDTPMKTTDQS
EISMWMQTLFGQEGQPRPPSPIPAVKTDLKALDPTQDIVVWLGHSSYFVQLGGQRILIDP
VFSTYAAPIPGVNKAFEGTSLYTADDIPEIDALLISHDHYDHLDYPTVLALQPKVRKVIV
GLGVGAHFERWGYDMGVVREADWNEVIALTPNVRVHVTTARHYSGRTFTRDQSLWVGFAL
VSPEQRLFFSGDSGYGPHFAEIGQRMGPFDYVAIDAGQYDPRWANVHMNPEQAAQAAKDL
HARVLMQTHVGRFSIAPHDWDDPFKRMQVASQGQTFALWTPEIGRTVYLDGRAQSFTAWW
EDDVVKTPPQLAAGAREE