Protein Info for Pf6N2E2_1868 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 310 to 326 (17 residues), see Phobius details PF01636: APH" amino acids 144 to 288 (145 residues), 43.9 bits, see alignment E=4e-15 PF02958: EcKL" amino acids 203 to 292 (90 residues), 59 bits, see alignment E=7.6e-20 PF07914: DUF1679" amino acids 223 to 318 (96 residues), 38.8 bits, see alignment E=8.4e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZX41 at UniProt or InterPro

Protein Sequence (357 amino acids)

>Pf6N2E2_1868 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MKPIIRNPAEFTPAWLTDTLTKAGALTKGHVSNLTVETVGTGQLGSVVRLTPTYEGADEF
APNTIIAKLASVSETSRQTGVAMGVYEAEVRFYQQISRTVEIRTPRCWFAEFDPTEGWFT
LLFEDLGTYSVGNVIEGGTVEQARLALQQLIRLQEPRWNDPSLLDLPWLADQRRTVGLFS
LFPGVLGGFSKTFAPLIDPELIRLAERVVPRSVEYISRLDGPRVIQHGDYRLDNMLFGHD
SEHSPLIVVDWQTVRLGSPMVDAAFYLGAGLSTKLRQRHEQELIRDYHEQLLAMGVRDFS
WQACWDGYRLHALYGFFMAVGTSMLVQQNERGLAMYKTSLERHGAHVLELNAEALFN