Protein Info for Pf6N2E2_1851 in Pseudomonas fluorescens FW300-N2E2

Annotation: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00108: Thiolase_N
  • amino acids 5 to 230 (226 residues), 137.7 bits, E=7.1e-44
• TIGR01930: acetyl-CoA C-acyltransferase
  • amino acids 7 to 400 (394 residues), 404.6 bits, E=2.1e-125
• PF00109: ketoacyl-synt
  • amino acids 85 to 123 (39 residues), 22.8 bits, 9.8e-09
• PF02803: Thiolase_C
  • amino acids 281 to 401 (121 residues), 145.5 bits, E=9.4e-47

Best Hits

Swiss-Prot: 58% identical to Y0859_MYCTU: Putative acyltransferase Rv0859 (fadA) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

KEGG orthology group: K00626, acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (inferred from 68% identity to sil:SPOA0425)

Predicted SEED Role

"3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)" (EC 2.3.1.16, EC 2.3.1.9)

MetaCyc Pathways

• oleate β-oxidation (30/35 steps found)
• fatty acid salvage (6/6 steps found)
• photosynthetic 3-hydroxybutanoate biosynthesis (engineered) (20/26 steps found)
• 2-methyl-branched fatty acid β-oxidation (11/14 steps found)
• superpathway of glyoxylate cycle and fatty acid degradation (11/14 steps found)
• benzoyl-CoA biosynthesis (3/3 steps found)
• ketolysis (3/3 steps found)
• L-isoleucine degradation I (5/6 steps found)
• 1-butanol autotrophic biosynthesis (engineered) (20/27 steps found)
• valproate β-oxidation (7/9 steps found)
• (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) (4/5 steps found)
• 4-hydroxybenzoate biosynthesis III (plants) (4/5 steps found)
• ketogenesis (4/5 steps found)
• fatty acid β-oxidation I (generic) (5/7 steps found)
• polyhydroxybutanoate biosynthesis (2/3 steps found)
• propanoate fermentation to 2-methylbutanoate (4/6 steps found)
• pyruvate fermentation to butanol II (engineered) (4/6 steps found)
• acetoacetate degradation (to acetyl CoA) (1/2 steps found)
• fatty acid β-oxidation II (plant peroxisome) (3/5 steps found)
• glutaryl-CoA degradation (3/5 steps found)
• pyruvate fermentation to hexanol (engineered) (7/11 steps found)
• fatty acid β-oxidation VI (mammalian peroxisome) (4/7 steps found)
• 5,6-dehydrokavain biosynthesis (engineered) (6/10 steps found)
• L-glutamate degradation V (via hydroxyglutarate) (6/10 steps found)
• superpathway of Clostridium acetobutylicum acidogenic fermentation (5/9 steps found)
• fatty acid β-oxidation VII (yeast peroxisome) (2/5 steps found)
• 2-deoxy-D-ribose degradation II (4/8 steps found)
• (2S)-ethylmalonyl-CoA biosynthesis (1/4 steps found)
• (8E,10E)-dodeca-8,10-dienol biosynthesis (6/11 steps found)
• acetyl-CoA fermentation to butanoate (3/7 steps found)
• pyruvate fermentation to butanoate (3/7 steps found)
• 3-phenylpropanoate degradation (5/10 steps found)
• superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) (5/10 steps found)
• 4-ethylphenol degradation (anaerobic) (2/6 steps found)
• 4-oxopentanoate degradation (4/9 steps found)
• glycerol degradation to butanol (9/16 steps found)
• ethylbenzene degradation (anaerobic) (1/5 steps found)
• isopropanol biosynthesis (engineered) (1/5 steps found)
• pyruvate fermentation to acetone (1/5 steps found)
• pyruvate fermentation to butanol I (3/8 steps found)
• mevalonate pathway I (eukaryotes and bacteria) (2/7 steps found)
• mevalonate pathway II (haloarchaea) (2/7 steps found)
• 9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast) (4/10 steps found)
• L-lysine fermentation to acetate and butanoate (4/10 steps found)
• 10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast) (1/6 steps found)
• benzoate biosynthesis I (CoA-dependent, β-oxidative) (3/9 steps found)
• 2-methylpropene degradation (2/8 steps found)
• isoprene biosynthesis II (engineered) (2/8 steps found)
• mevalonate pathway III (Thermoplasma) (2/8 steps found)
• mevalonate pathway IV (archaea) (2/8 steps found)
• 3-hydroxypropanoate/4-hydroxybutanate cycle (9/18 steps found)
• methyl tert-butyl ether degradation (3/10 steps found)
• superpathway of Clostridium acetobutylicum solventogenic fermentation (5/13 steps found)
• superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation (7/17 steps found)
• L-glutamate degradation VII (to butanoate) (3/12 steps found)
• 10-cis-heptadecenoyl-CoA degradation (yeast) (2/12 steps found)
• 10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast) (2/12 steps found)
• ethylmalonyl-CoA pathway (1/11 steps found)
• (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) (2/13 steps found)
• crotonate fermentation (to acetate and cyclohexane carboxylate) (4/16 steps found)
• L-tryptophan degradation III (eukaryotic) (3/15 steps found)
• docosahexaenoate biosynthesis III (6-desaturase, mammals) (2/14 steps found)
• benzoate fermentation (to acetate and cyclohexane carboxylate) (4/17 steps found)
• toluene degradation VI (anaerobic) (4/18 steps found)
• cholesterol degradation to androstenedione I (cholesterol oxidase) (3/17 steps found)
• jasmonic acid biosynthesis (4/19 steps found)
• superpathway of L-lysine degradation (19/43 steps found)
• sitosterol degradation to androstenedione (1/18 steps found)
• androstenedione degradation I (aerobic) (6/25 steps found)
• platensimycin biosynthesis (6/26 steps found)
• cholesterol degradation to androstenedione II (cholesterol dehydrogenase) (3/22 steps found)
• superpathway of testosterone and androsterone degradation (6/28 steps found)
• superpathway of ergosterol biosynthesis I (4/26 steps found)
• androstenedione degradation II (anaerobic) (4/27 steps found)
• Methanobacterium thermoautotrophicum biosynthetic metabolism (21/56 steps found)
• superpathway of cholesterol degradation I (cholesterol oxidase) (9/42 steps found)
• superpathway of cholesterol biosynthesis (4/38 steps found)
• superpathway of cholesterol degradation II (cholesterol dehydrogenase) (9/47 steps found)
• superpathway of cholesterol degradation III (oxidase) (5/49 steps found)

KEGG Metabolic Maps

• Benzoate degradation via CoA ligation
• Benzoate degradation via hydroxylation
• Biosynthesis of plant hormones
• Biosynthesis of unsaturated fatty acids
• Butanoate metabolism
• Ethylbenzene degradation
• Fatty acid elongation in mitochondria
• Fatty acid metabolism
• Geraniol degradation
• Lysine degradation
• Propanoate metabolism
• Pyruvate metabolism
• Synthesis and degradation of ketone bodies
• Terpenoid biosynthesis
• Tryptophan metabolism
• Valine, leucine and isoleucine degradation
• alpha-Linolenic acid metabolism

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.16, 2.3.1.9

Use Curated BLAST to search for 2.3.1.16 or 2.3.1.9

Sequence Analysis Tools

See A0A159ZX24 at UniProt or InterPro

Protein Sequence (402 amino acids)

>Pf6N2E2_1851 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Pseudomonas fluorescens FW300-N2E2)
MSQAVFIYDAVRTPRGKGKKDGALYSVKPVHMAAGLLTELQQRYDLDTSRVDDVVLGCGQ
PVGEQGGDVAKCVVQYAGWDESVPGVQIDRFCASGLEAVNQAASRIASGWEDLIVAGGVE
SMSRLPMGAAGQAWIQDPEIAFKLQSVPQGIGADLLAALDGYSREDVDRFALVSQQRAAH
ARDSGYFDRSVVPVRDLNGLVVLERDEFIKPATTLEALSQLKPSFAAMGKLGYSDVALRK
YPQVARIEPIHTAGNSSGIVDGASATLLGSERIGQQLGLAPRGRIIATAVLSTEPTLMLA
GPGPAAKKALAKAGLSVQDIDLFEINEAFASVVLRFMRDLDISPEITNVNGGAIALGHPI
GATGAMLVGTVLDELERRNLKRGLIALCVGGGMGIATIIERL