Protein Info for Pf6N2E2_1822 in Pseudomonas fluorescens FW300-N2E2

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1239 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 421 to 441 (21 residues), see Phobius details PF00672: HAMP" amino acids 444 to 492 (49 residues), 34.6 bits, see alignment (E = 5.6e-12) PF00512: HisKA" amino acids 552 to 618 (67 residues), 57.2 bits, see alignment 4.2e-19 PF02518: HATPase_c" amino acids 665 to 775 (111 residues), 105.1 bits, see alignment E=8.6e-34 amino acids 1123 to 1233 (111 residues), 67.8 bits, see alignment E=3.2e-22 PF00072: Response_reg" amino acids 838 to 949 (112 residues), 98.2 bits, see alignment E=9.8e-32

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a2185)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVU5 at UniProt or InterPro

Protein Sequence (1239 amino acids)

>Pf6N2E2_1822 sensor histidine kinase (Pseudomonas fluorescens FW300-N2E2)
MLTFKSSTDRPIAVRIGLAVAALVFLMLVVSLVNLYGLRGMVRAVDSASHSAEILASVNG
ATGRVENFIATRDQESLSQAEGMVATAIAGLTAIPVAEAQSLKGSLERLAAAIAALRAAT
LTMDGETENMTAHYGRMREATILVEQGIADGMKGLESRTAEHEARVSNIESAHRILDILR
NGERIITANVARMLVTGDGTAATAARNASAALRPVVEQLRELMGAPQEREALDQLATALD
AAGVAVEHLGEAPKLRGGEALRYLAAVGDTVERLEAMLGEVEGHVVHDASDIQAATGLLR
NAAALSKRFAERVATLEAQTLSFRLSPSAEVAGSVGEILAELSRLARVLPSSGGPQAKAT
PLTVSDQIAGYRAAFARFRQASDALSDARDQVRNEARSAGLLVARFAGQARSDALVHNDR
GMLATIVAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLNAEIASAERGDEIG
IMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDALHHQTEVLEAQAIELI
QARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLRAATTPPADWHVQVDRAQRNAL
RLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMVAEGKGCTLTCSIDPALG
TVFLDPRHFEKILLNLVSNAIKFTPAGGTVHVAVAAIDGERFELAVQDSGIGIAPDKLPL
LFQRFSQIDNSATRHYSGTGIGLALVKDLVKLMGGEVGVNSEPGRGSCFFVRLPLGAEQD
TVPGETSHMHERSSLSTASTTEQRHLRFDDGRHGSRNDRAPMEDAVEQHSEHALRSKVLV
VDDSPEMLSYLRELLRDDYSVATATDGEQAWALLQRRPIDVVVSDVMMPKLDGFGLTARI
KASAGFAHLPVILVTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAALRMGQVQTE
LNAKSRQAGMAEIATTVLHNVGNVLNSVNVSAELVSSQMRTSKAQGLGKVAQLLSEHVHD
LNDFLTRDHKGKMLPDYLLRLAKVVTEEQQGIIEELGQLTKGIDHIKTIVAAQQSYAVAV
SIVETVPVAELIDDALRMSAGLLARQEVTMVKNIADLPLLALDRHRVLLILVNLIGNAKQ
ALDGVIDRSPCVTFSVSLVDGAVLRITVADNGNGIAPEHLKRIFTHGFTTRKDGHGFGLH
SCALAAQEMGGSLTVHSDGVGQGATFTLDIPLDASLSKP