Protein Info for Pf6N2E2_18 in Pseudomonas fluorescens FW300-N2E2

Annotation: Outer membrane pyoverdine eflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 9 to 459 (451 residues), 347 bits, see alignment E=8.7e-108 PF02321: OEP" amino acids 58 to 252 (195 residues), 77.6 bits, see alignment E=5.4e-26 amino acids 281 to 458 (178 residues), 83 bits, see alignment E=1.2e-27

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a3910)

Predicted SEED Role

"Outer membrane pyoverdine eflux protein" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YGU4 at UniProt or InterPro

Protein Sequence (464 amino acids)

>Pf6N2E2_18 Outer membrane pyoverdine eflux protein (Pseudomonas fluorescens FW300-N2E2)
MKAPLTLLAASLLLAACASPLSPSDSGIQPPPAWQNLDTPSARADNQQWWTQFGSPQLDR
LIEQARLDSHDLAAAMARVRQAQARAVIAGAPLLPEIRAGLNGNRQELLRGKGYSQLDVD
RDNRTIDYYDANLSATYELDFWGGKRAARDSALSTLSASQFDRATVELTLLSGVANSYTQ
ALSLREQQRIAEQNLHNAQRVLDLVQTRYDAGSATALELSQQKSLVAAQQRRLPQVQQQA
KEALITLAALLGQPVQAVRLDDEQFEHLQWPSIDAGVPSDLLRRRPDIAAAEARLTAAQA
DITVARAAMLPSVTLGLSLGTGADIADQLLRNNVYNLTAGLAAPIFNNGRLRAERDRTTA
RQEELLELYRAAIINGFADVEKALNSINGLDQQRQWQTEELQQAQTAFDIAQRRYQAGAE
DLLTVLETQRTLYAAQDMNVQLRLARVQASVALYRALGGDWRVM