Protein Info for Pf6N2E2_1727 in Pseudomonas fluorescens FW300-N2E2

Annotation: Acyl-CoA dehydrogenase (EC 1.3.8.7)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 PF12418: AcylCoA_DH_N" amino acids 5 to 32 (28 residues), 37.9 bits, see alignment (E = 3.6e-13) PF02771: Acyl-CoA_dh_N" amino acids 83 to 158 (76 residues), 35.6 bits, see alignment E=2.8e-12 PF02770: Acyl-CoA_dh_M" amino acids 163 to 273 (111 residues), 49.6 bits, see alignment E=9e-17 PF00441: Acyl-CoA_dh_1" amino acids 283 to 451 (169 residues), 72.4 bits, see alignment E=1.2e-23 PF12806: Acyl-CoA_dh_C" amino acids 470 to 585 (116 residues), 104.4 bits, see alignment E=1.2e-33

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a2264)

Predicted SEED Role

"Acyl-CoA dehydrogenase (EC 1.3.8.7)" (EC 1.3.8.7)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.3.8.7

Use Curated BLAST to search for 1.3.8.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZWT4 at UniProt or InterPro

Protein Sequence (590 amino acids)

>Pf6N2E2_1727 Acyl-CoA dehydrogenase (EC 1.3.8.7) (Pseudomonas fluorescens FW300-N2E2)
MPEFNAPLRDMRFVLHEVFNAPNLWARLPALANTVDAATADAILEEAAKVTHHLIFPLNR
SGDEEGAQWHDGQVSTPNGFKAAYSTYIDGGWVGLSGNPAYGGMGMPKMLAVQFEEMLYA
ANSSFALYSALSSGACLAIDAHASEALKALYLPPMYEGRWAGSMCLTEAHAGTDLGIIRT
RAEPQADGSYRITGSKIFITGGEQDLTENIIHLVLAKLPDAPAGPKGISLFLVPKIRVDA
QGMLGEANAVSCGSIEHKMGIKASATCVMNFDGASGWLIGEANKGLAAMFTMMNYERLSI
GIQGIGCAEASYQNARRYAQERIQSRSPAGAQAKDKIADPIIVHPDVRRMLLSMKAMTEG
GRAFACYVGQQLDLAKFCDHPQERLDAEALVALLTPVAKAFFTDTGLDSCIHGQQVFGGH
GYIREWGQEQLVRDVRIAQIYEGTNGIQALDLLGRKVVGNGGVALRLFTTQIRDFAYLPG
AAYAAELLDAVQRLENLSDWLQQQASLDPHAIGSACVEYLHLFGYVAYAYMWARMAQTAE
HQHATDPTFYGAKLGTARFYFSRLLPRILSLEQSIRAGSPSLLQLQPEQF