Protein Info for Pf6N2E2_1700 in Pseudomonas fluorescens FW300-N2E2

Annotation: Acyl-CoA dehydrogenase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 18 to 407 (390 residues), 618.7 bits, see alignment E=1.9e-190 PF02771: Acyl-CoA_dh_N" amino acids 33 to 130 (98 residues), 54.2 bits, see alignment E=2.7e-18 PF08028: Acyl-CoA_dh_2" amino acids 250 to 382 (133 residues), 67.5 bits, see alignment E=2.3e-22 PF00441: Acyl-CoA_dh_1" amino acids 253 to 379 (127 residues), 32.9 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a2290)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZU02 at UniProt or InterPro

Protein Sequence (407 amino acids)

>Pf6N2E2_1700 Acyl-CoA dehydrogenase family protein (Pseudomonas fluorescens FW300-N2E2)
MTQSLSSEQVRPAPRSPAHIIRSDAEAIEVAQRLAEDFAREAVLRDRERRLPWEELERFS
ASGLWAIRVPKAYGGAEVSYATLSEVIAIISAADPSLGQLPQNHFGVLSNLSLTGSEEQK
RRYYAKVLQGYRFGNAFSEARSQYVTTFQTQIRFDGDTAVLDGEKAYCTGALFAHIVPVA
GVDEEGHVHIALVPRDAAGLTVIDSWDGFGQRITASGQVRIEGVRVPASDVVPAWKAYDQ
PTSDGPISQIIQAAVDTGIARGAFAETLRVARQARPWVDSGLQHGWQDPLGQALIGELAW
RLQAAEAILRRAAHAVDRAVAEPSEERVAEASVIVGQAKVLSTEISLEASSRLLELGGTR
SVSASQGLDRFWRNARTHTLHDPVRWKYHLVGNQLLNGIKPQRHSWN