Protein Info for Pf6N2E2_1692 in Pseudomonas fluorescens FW300-N2E2

Annotation: transporter, LysE family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details amino acids 28 to 28 (1 residues), see Phobius details transmembrane" amino acids 22 to 27 (6 residues), see Phobius details amino acids 41 to 65 (25 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 119 to 141 (23 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details PF01810: LysE" amino acids 15 to 207 (193 residues), 102.5 bits, see alignment E=1e-33

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a2296)

Predicted SEED Role

"transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVK9 at UniProt or InterPro

Protein Sequence (213 amino acids)

>Pf6N2E2_1692 transporter, LysE family (Pseudomonas fluorescens FW300-N2E2)
MELHSILAFTLVAAIAIASPGPATLMAINNSLAYGPRYAVWSSVGNASGLFCLSAAAMLG
LGALLASSEWLFNAVKVLGAGYLFYLGARQLFKKTPILAQDVQADGKTSKPSRSKLYKSA
FLTAITNPKATMFFTALFPQFIDQSAPLLPQFLLLTSIFAGLSLVSLSLYAAIAAQAQGV
LKRPAFSVWISRLVGSTFIGFGAAILAMRRPAV