Protein Info for Pf6N2E2_1689 in Pseudomonas fluorescens FW300-N2E2

Annotation: Probable porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 PF03573: OprD" amino acids 5 to 156 (152 residues), 158.8 bits, see alignment E=1.1e-50

Best Hits

Predicted SEED Role

"Probable porin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (158 amino acids)

>Pf6N2E2_1689 Probable porin (Pseudomonas fluorescens FW300-N2E2)
VGAINSGSAYGGKIDNDMLSGLLSYAVVGHTLSAGYQTLSGEAGLPYVSGATVYSFSNVG
IGKFIEEDEKTWMLGYGYDFARLGVPGLTFSTRYLSGNDGKSNTTVKEWERDAEIAYVVQ
QGTFKGLGVKLRNYVYRSDFSRGRDSNRIYFSYDIALW