Protein Info for Pf6N2E2_1588 in Pseudomonas fluorescens FW300-N2E2

Annotation: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 transmembrane" amino acids 70 to 91 (22 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details PF00501: AMP-binding" amino acids 20 to 383 (364 residues), 193.6 bits, see alignment E=2.5e-61

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2455)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZU22 at UniProt or InterPro

Protein Sequence (506 amino acids)

>Pf6N2E2_1588 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Pseudomonas fluorescens FW300-N2E2)
MKSLSYKEGFLHRFVGFSESFPEQVAIRHLDTEEDTVTYRELHIKAEQCNGALTALGVLP
GDKVALVLPNGLAFIAYYLAIIGRGAIPVILNYKLTPFEMASVVSLARPTLVVTTETLWV
QHSEVFQADNGVRHSLVLDGGSEPSSSLPANATAISQLPCQVEPLLLPEGNPVVSVQFTY
RGIGRPLAVSHRYLDLTQSSDGLHEHFHLQGVGSVHLVTLPLYAIFGLSVMMVFPLSVGA
TLLMTNTLLNRDLAEVLSEHQVTFACLVPDVIRYFNTRLAKRKGALLPLHPQLMIYSGGS
HLPADEAEKLGKLLGCNPVLQGYGLTESMPVIVQSSIGTVHRGAMGQPISGVELRIVDAQ
GRDVTPGRIGELLIRGSMVIDGYNDAEDTNARFFRDGWFHSGDLVWQDDDGHVFFYCQRL
RISKIKAQMVDLVEIESVALKHPDVVRAKAYIVPDHKEVNVLHLCVEGTGELSQNALSTL
LSRYLSGFKLPKTIEITSLKEEAHAR