Protein Info for Pf6N2E2_1578 in Pseudomonas fluorescens FW300-N2E2

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1391 PF19116: DUF5801" amino acids 489 to 623 (135 residues), 140.4 bits, see alignment E=2.4e-45 amino acids 643 to 777 (135 residues), 140.3 bits, see alignment E=2.6e-45 amino acids 797 to 930 (134 residues), 140.6 bits, see alignment E=2.1e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165Z2H1 at UniProt or InterPro

Protein Sequence (1391 amino acids)

>Pf6N2E2_1578 T1SS secreted agglutinin RTX (Pseudomonas fluorescens FW300-N2E2)
MTIREQDSALLSDPASPFTATASTDLGVVATGVDVTLDETANLQNGTATPSPATDADDND
ILVASLPTAFASRLTALGTGTATGAALSGYTGAVGDTGSDAFTVNAAPGASITNISFVGS
TGAPLDGVDSGLDTLNGTSILLYTDTNDNIVLGRAGGPAGAIVFAAYIEETATGGKIWTV
LYEPLQQPVNTNPDDAVNLLDKVFIGASQDLEFSLANAPSGQNLFLMFTTANPTTTLVDG
VLRINEPTIIATGKDPADQSSGANITTGDTINTSQAGGPTTFGTNNQMIVEQEGIRFTFV
TGARQDVTIPNLDQTEADLESNIDFTDVFNTKMANFDVVQLQAGKTAVVKISAFSTAAES
GVNFINGYAGDTPVAISNVRVTNISTGAVIENSDGSANDAGIVISFASGVATITGVKAGY
QIEYTTTSDHNRVLIENGAALDAKGTDHADFDIGGFTLVQASTAKTEIGSKMIFEDDGPS
ISTTGTEPTLTVDETLLGTNATQNFAANFTSAYGADGAGTLTYALGVVAGASGLTDTATG
EEVNLSLNGAVVEGRTASTNLLVFTVSVAANGDVTLDQIRAVVHPDTTNPDDAKSLTSDN
LVTLTATKTDKDGDSVQATLNIGQNLVFEDDGPSISTTGTEPTLTVDETLLGTNATQNFA
ANFTSAYGADGAGTLTYALGVVAGASGLTDTATGEAVNLSLNGTTVEGRTASTNLLVFTV
SVATNGDVTLDQMRAVVHPDTTNPDDAKSLTSDNLVTLTATKTDKDGDSVQATLNIGQNL
VFEDDGPSISTTGTEPTLTVDETLLGTNATQNFAANFTSAYGADDAGTLTYALGVVAGAS
GLTDTATGEAVNLSLNGTTVEGRTASTNLLVFTVSVAANGDVTLDQIRALVHPDATNPDD
AKSLTDNLVTLIATKTDKDGDSASATLNIGQNLVFEDDGPSVAFGNLIGTGSVLAQYGFW
EKSAGADGLGAAGLDIALVNGQFTLVRPDDTTTTGTGTLVEQAPSPDVDGAYHFAGTLTG
DFDNNAATADTSVDYTLTAYANGSYALDLVQGFSSTIVRSSADGSLDAGGPDPVRTLLIP
ETNNPTIPSASEEIVFFSAKALASTTDILTGIGLGAPDPTEAALQTTPLPSYIDPTAMNV
STSGIGVGNNLLQGDNLAAIGAADESFVINPESLVTGMKIFIDNSVAGYNTATEDLYFRI
YYEDGTFSNLTEVNTLTPEAGGQVSFEIEREGTAMIDAVQLTMGRGAIKIPVIQFIQETE
NLASDVQLSFNATLTDKDGDTATSAFDANLFANNAADALFDYTLVGTGGERDAFNVDLTF
TENQYQVTGFDVSQNLRDTLVLNGDQSAVVQSIDNAGADSIVTVAESGGQITTITLVGVD
LQSGDVVFGNA