Protein Info for Pf6N2E2_1535 in Pseudomonas fluorescens FW300-N2E2

Annotation: GENE II AND X PROTEINS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 85 to 110 (26 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details PF20398: DUF6691" amino acids 3 to 139 (137 residues), 173.4 bits, see alignment E=1.7e-55

Best Hits

Swiss-Prot: 46% identical to Y765_XYLFA: UPF0394 membrane protein XF_0765 (XF_0765) from Xylella fastidiosa (strain 9a5c)

KEGG orthology group: K07112, (no description) (inferred from 96% identity to pba:PSEBR_a2508)

Predicted SEED Role

"GENE II AND X PROTEINS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVV2 at UniProt or InterPro

Protein Sequence (141 amino acids)

>Pf6N2E2_1535 GENE II AND X PROTEINS (Pseudomonas fluorescens FW300-N2E2)
LNMRKLTAFIAGLLFGFGLLLAGMANPKKVLGFLDLAGTWDPSLALVMIGAIGTAIVPLA
WARQQTHSLLGSPMQLPVKRELDPRLIGGSLVFGIGWGIAGICPGPAVAILLTGHWQAIV
FMLAMLAGMLLFTVLETRRVH