Protein Info for Pf6N2E2_1442 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transcriptional regulators of sugar metabolism

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 PF08220: HTH_DeoR" amino acids 12 to 64 (53 residues), 43.3 bits, see alignment E=2.5e-15 PF00455: DeoRC" amino acids 81 to 236 (156 residues), 123.7 bits, see alignment E=7e-40

Best Hits

KEGG orthology group: None (inferred from 90% identity to pba:PSEBR_a2606)

Predicted SEED Role

"Transcriptional regulators of sugar metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVM2 at UniProt or InterPro

Protein Sequence (264 amino acids)

>Pf6N2E2_1442 Transcriptional regulators of sugar metabolism (Pseudomonas fluorescens FW300-N2E2)
MTSPHEAFPGERQQLISQRLARYGRVIAADLASEFNVSEHSIRRDLGVLAAAGLCKRVYG
GAILVPAAEGSLDVRVRKDPARKGSLGQAAAALLRAGQHVFIDAGSTNLAIAGAIDPGLQ
LTLSTNSPLIAVQLMKLPRAEVILLGGRLNPIAGGVIGLTAVEQLRQFSYDVCFLGACAI
DPDNGVTAFGLEDAEFKRAVVAASGQVITAVTNEKLSSVAHYQVVSCEEVAALVVEHDAP
RERLEPFYDRVTNVVTSVREQLRS