Protein Info for Pf6N2E2_14 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative dipeptidase, pyoverdin biosynthesis PvdM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF01244: Peptidase_M19" amino acids 50 to 438 (389 residues), 321.1 bits, see alignment E=3.8e-100

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3912)

Predicted SEED Role

"Putative dipeptidase, pyoverdin biosynthesis PvdM" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YGM1 at UniProt or InterPro

Protein Sequence (456 amino acids)

>Pf6N2E2_14 Putative dipeptidase, pyoverdin biosynthesis PvdM (Pseudomonas fluorescens FW300-N2E2)
MTTRRSKKALFIGLPLALALAVGGGLAAWDHWWRDNPGYPVKVMKEARELHERLLSFDSH
ITVPLDFGTAGNEADKDGNGQFDLVKANRGQLSGAALTVFGWPELWNGDNAPHKPTAGFV
EEARNQQEVRYKIITGLVRDFPNQVAIAYTPDDFRRLHGEGKFAIFISMLNAYPLGHDLS
LLDLWTARGMRMFGFSYIGNNDWADSSRPLPFFNDSPDALGGLSDIGKQAVSRLNDLGVI
IDVSQMSTLALEQVAQLSRTPLVASHSAPRAMVDIPRNLSDKEMQLIKASGGVVQIVGFS
QYLRPLTQKTQDKLNALRERFGLQPLPNLAMALMPGDPIIAAWPEQKFGEYASQLYAILE
EEPKASLKDLGDAIDYTVRKIGIDHVGISSDFNEGGGVRGWENVGDIRNVTAELLTRGYS
EADIAKLWGGNFLRVWDQVQKAARPAIASTQKTVQP