Protein Info for Pf6N2E2_1370 in Pseudomonas fluorescens FW300-N2E2
Annotation: Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to XYLC_PSEPU: Benzaldehyde dehydrogenase [NAD(+)] (xylC) from Pseudomonas putida
KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a2680)MetaCyc: 50% identical to benzaldehyde dehydrogenase monomer (Pseudomonas putida mt-2)
Benzaldehyde dehydrogenase (NAD(+)). [EC: 1.2.1.28]; 1.2.1.28 [EC: 1.2.1.28]; 1.2.1.28 [EC: 1.2.1.28]; 1.2.1.28 [EC: 1.2.1.28]
Predicted SEED Role
"Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28)" in subsystem Phenylpropanoid compound degradation (EC 1.2.1.28)
MetaCyc Pathways
- 1,3-dimethylbenzene degradation to 3-methylbenzoate (1/3 steps found)
- 1,4-dimethylbenzene degradation to 4-methylbenzoate (1/3 steps found)
- 3-chlorotoluene degradation II (1/3 steps found)
- D-phenylglycine degradation (1/3 steps found)
- toluene degradation to benzoate (1/3 steps found)
- benzoate biosynthesis III (CoA-dependent, non-β-oxidative) (2/5 steps found)
- benzoate biosynthesis II (CoA-independent, non-β-oxidative) (1/4 steps found)
- mandelate degradation I (1/5 steps found)
- salicin biosynthesis (1/6 steps found)
- toluene degradation IV (aerobic) (via catechol) (6/13 steps found)
- mandelate degradation to acetyl-CoA (9/18 steps found)
- superpathway of aerobic toluene degradation (14/30 steps found)
- superpathway of aromatic compound degradation via 3-oxoadipate (15/35 steps found)
- superpathway of aromatic compound degradation via 2-hydroxypentadienoate (10/42 steps found)
KEGG Metabolic Maps
- Benzoate degradation via hydroxylation
- Biosynthesis of phenylpropanoids
- Toluene and xylene degradation
Isozymes
Compare fitness of predicted isozymes for: 1.2.1.28
Use Curated BLAST to search for 1.2.1.28
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A159ZUY3 at UniProt or InterPro
Protein Sequence (490 amino acids)
>Pf6N2E2_1370 Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28) (Pseudomonas fluorescens FW300-N2E2) MSASKSHLLSQVIESECVFNGDWVPASGPLQSIIEPATGERLMRCATADSADIAKASRDA ALAQPGWAALGPRQRAAIFRKAAEVAEHSFNELALYVARETGAALFKGQHEVREAIVLLH QAAGLLSQAHGVVLPSEAGRLSYARRQPHGVVGVISPFNFPLVLSMRSVAPALAAGNAVV LKPDPQTPVSGGFLIARLFEVAGLPKGLLQVLPGAADAGEALCRDPNVRMIAFTGSTGAG RKVAEVAGRNLKKVALELGGKNPLIILEDADLDLAARNAAWGAWLHQGQICMATGLILAH ESIAEELTRKLVEKARALTVGNAAQGEAALGPLINQRQLKRVHDIVSDSVRAGARLEAGG EHDRLFYQATVLSGVKPGMRAFDEEIFGPVATVVSFATDDEAVELANRTEYGLAAAIISS SVGRAMAIGERLQCGMLHINDQTVADECINPFGGRGASGNGGSVGGPADWDEYTQWQWVT VKDKAPVYPF