Protein Info for Pf6N2E2_1359 in Pseudomonas fluorescens FW300-N2E2

Annotation: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01887: putative dipeptidase" amino acids 106 to 568 (463 residues), 232.3 bits, see alignment E=6.5e-73 PF01546: Peptidase_M20" amino acids 170 to 569 (400 residues), 70.1 bits, see alignment E=2.5e-23 PF07687: M20_dimer" amino acids 358 to 392 (35 residues), 21.3 bits, see alignment (E = 2.1e-08)

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a2690)

Predicted SEED Role

"Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUX6 at UniProt or InterPro

Protein Sequence (579 amino acids)

>Pf6N2E2_1359 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases (Pseudomonas fluorescens FW300-N2E2)
MDFSLKHLAVTTLLLSSLASITTPAFANITAQQGAAIVKTFSNTSVTDFRQFLADVAKSD
PGKAANLGPAISAFQGNKTLSAEQQNEIHRLLGLYARVKYGQAATETLKELVAIPTFRKD
GVAQHENPEFLKIADKIKSLAEAFNLNFRNVDNRVYEISLEGGGDEVVGIHAHADVVPVT
PENWVLKDGTRLDPFKVTLVGDRMYGRGTEDDKNGIVVALYAMKIIKEEKLPLARNFKLL
VDTTEETTGDAIPYYFERNPTPNYNLALDGGYPVVIAEKGYGTIMANFTRRAAQGKGAEI
TALTGGLATNQIPSTSVATFASDKPAELATSLLKAGTDYAKRNGGHFEVASQVVGKDVQL
TFTGVSAHSSEPESGVNPVARMLDFIHGLDGKVALKRNHITDAARYAADNWGLDYLGSKL
GIGFSDAFMGPLTASLTYVGMDEKTFKLAVNLRVPVGKTTAALKTEIADKLAAWSKKSHV
AVAFDYSIDEPMYRNPEGEWVKALLAVASENLGMEHKYGTSAGATSVHDLPNGVQFGLAM
PDVKYTGHNDNEFKTVEQFLLDLQIVTEMMGRIGQLPKL